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  5. MA_4577g0010

MA_4577g0010


Description : (at5g64570 : 920.0) Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.; beta-D-xylosidase 4 (XYL4); FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p83344|xynb_prupe : 474.0) Putative beta-D-xylosidase (EC 3.2.1.-) (PpAz152) (Fragment) - Prunus persica (Peach) & (reliability: 1840.0) & (original description: no original description)


Gene families : OG_42_0000397 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000397_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_4577g0010
Cluster HCCA clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
112087 No alias Glycosyl hydrolase family protein 0.02 Orthogroups_2024-Update
A4A49_10220 No alias beta-xylosidasealpha-l-arabinofuranosidase 2 0.03 Orthogroups_2024-Update
A4A49_11510 No alias beta-xylosidasealpha-l-arabinofuranosidase 2 0.05 Orthogroups_2024-Update
At1g02640 No alias Probable beta-D-xylosidase 2... 0.03 Orthogroups_2024-Update
At5g09700 No alias Glycosyl hydrolase family protein... 0.03 Orthogroups_2024-Update
Brara.F02333.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.03 Orthogroups_2024-Update
Brara.F02936.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.03 Orthogroups_2024-Update
Brara.I00420.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.03 Orthogroups_2024-Update
Glyma.14G170900 No alias Glycosyl hydrolase family protein 0.02 Orthogroups_2024-Update
HORVU4Hr1G003910.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.04 Orthogroups_2024-Update
LOC_Os11g18690 No alias glycosyl hydrolase family 3 protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00001080-RA No alias (at3g19620 : 885.0) Glycosyl hydrolase family protein;... 0.03 Orthogroups_2024-Update
PSME_00001210-RA No alias (at1g78060 : 831.0) Glycosyl hydrolase family protein;... 0.05 Orthogroups_2024-Update
PSME_00021898-RA No alias (at5g64570 : 951.0) Encodes a beta-d-xylosidase that... 0.03 Orthogroups_2024-Update
PSME_00023182-RA No alias (at5g10560 : 365.0) Glycosyl hydrolase family protein;... 0.05 Orthogroups_2024-Update
PSME_00041045-RA No alias (at5g64570 : 329.0) Encodes a beta-d-xylosidase that... 0.02 Orthogroups_2024-Update
PSME_00042060-RA No alias (at5g64570 : 954.0) Encodes a beta-d-xylosidase that... 0.02 Orthogroups_2024-Update
Potri.001G206800 No alias beta-D-xylosidase 4 0.04 Orthogroups_2024-Update
Pp1s196_21V6 No alias periplasmic beta-glucosidase 0.02 Orthogroups_2024-Update
Seita.7G257800.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.04 Orthogroups_2024-Update
Seita.8G106400.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.02 Orthogroups_2024-Update
Sobic.005G110436.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.02 Orthogroups_2024-Update
Sobic.006G235600.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.03 Orthogroups_2024-Update
Solyc02g091680 No alias Beta-D-xylosidase (AHRD V3.3 *** A9YWR3_MEDTR) 0.03 Orthogroups_2024-Update
Sopen01g047480 No alias Glycosyl hydrolase family 3 N terminal domain 0.02 Orthogroups_2024-Update
Sopen04g029020 No alias Glycosyl hydrolase family 3 N terminal domain 0.03 Orthogroups_2024-Update
Sopen10g016980 No alias Glycosyl hydrolase family 3 N terminal domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003883 CTP synthase activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004474 malate synthase activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006097 glyoxylate cycle IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
BP GO:0046487 glyoxylate metabolic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001764 Glyco_hydro_3_N 82 323
IPR002772 Glyco_hydro_3_C 371 602
IPR026891 Fn3-like 652 720
No external refs found!