MA_46923g0010


Description : (at1g15340 : 116.0) Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.; methyl-CPG-binding domain 10 (MBD10); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 11 (TAIR:AT3G15790.1). & (reliability: 232.0) & (original description: no original description)


Gene families : OG_42_0002337 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002337_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_46923g0010
Cluster HCCA clusters: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
Solyc07g008170 No alias Methyl-CpG-binding domain protein (AHRD V3.3 *-* G7JE44_MEDTR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016556 mRNA modification IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:0080009 mRNA methylation IEP Predicted GO
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 38 84
No external refs found!