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  5. MA_474338g0010

MA_474338g0010


Description : (at2g39720 : 83.2) Encodes a putative RING-H2 finger protein RHC2a.; RING-H2 finger C2A (RHC2A); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G59550.1); Has 8622 Blast hits to 8603 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 2413; Fungi - 807; Plants - 4301; Viruses - 28; Other Eukaryotes - 1073 (source: NCBI BLink). & (reliability: 166.4) & (original description: no original description)


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_474338g0010
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
A4A49_07629 No alias e3 ubiquitin-protein ligase ring1-like protein 0.03 Orthogroups_2024-Update
A4A49_42233 No alias putative e3 ubiquitin-protein ligase rhc1a 0.03 Orthogroups_2024-Update
At3g60080 No alias At3g60080 [Source:UniProtKB/TrEMBL;Acc:Q9M1D5] 0.03 Orthogroups_2024-Update
At5g01980 No alias At5g01980 [Source:UniProtKB/TrEMBL;Acc:Q9LZN3] 0.03 Orthogroups_2024-Update
Brara.C00964.1 No alias signal transducer of abscisic acid perception *(AIP2) 0.03 Orthogroups_2024-Update
Brara.C02094.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.G00930.1 No alias E3 ubiquitin ligase *(SNIPER) 0.03 Orthogroups_2024-Update
Brara.G02768.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre10.g422050 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G473016 No alias RING-H2 finger C1A 0.04 Orthogroups_2024-Update
Glyma.10G089800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G286700 No alias COP1-interacting protein 8 0.04 Orthogroups_2024-Update
Glyma.17G108900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Kfl00113_0130 kfl00113_0130_v1.1 (at5g20910 : 134.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
LOC_Os11g37230 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g04450 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_61067g0010 No alias (at5g08139 : 94.4) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_79051g0010 No alias (at3g19950 : 171.0) RING/U-box superfamily protein;... 0.05 Orthogroups_2024-Update
PSME_00056956-RA No alias (at2g40830 : 186.0) Encodes a putative RING-H2 finger... 0.03 Orthogroups_2024-Update
Potri.006G217600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G181600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G317900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.8G172700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G176300.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen02g015860 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen08g024560 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010167 response to nitrate IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0015706 nitrate transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:1901698 response to nitrogen compound IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 294 336
No external refs found!