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  5. MA_47673g0010

MA_47673g0010


Description : (at5g11950 : 323.0) Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.; Putative lysine decarboxylase family protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 586.0) & (original description: no original description)


Gene families : OG_42_0000308 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000308_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_47673g0010
Cluster HCCA clusters: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Bradi3g28900 No alias lysine decarboxylase family protein 0.02 Orthogroups_2024-Update
Brara.B00088.1 No alias cytokinin phosphoribohydrolase *(LOG) 0.02 Orthogroups_2024-Update
Brara.B00205.1 No alias cytokinin phosphoribohydrolase *(LOG) 0.03 Orthogroups_2024-Update
Glyma.09G229100 No alias Putative lysine decarboxylase family protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G050770.10 No alias cytokinin phosphoribohydrolase *(LOG) 0.06 Orthogroups_2024-Update
HORVU5Hr1G124750.1 No alias cytokinin phosphoribohydrolase *(LOG) 0.03 Orthogroups_2024-Update
LOC_Os10g33900 No alias possible lysine decarboxylase domain containing protein,... 0.02 Orthogroups_2024-Update
Sobic.001G004500.1 No alias cytokinin phosphoribohydrolase *(LOG) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006359 regulation of transcription by RNA polymerase III IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009890 negative regulation of biosynthetic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016480 negative regulation of transcription by RNA polymerase III IEP Predicted GO
BP GO:0031324 negative regulation of cellular metabolic process IEP Predicted GO
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051253 negative regulation of RNA metabolic process IEP Predicted GO
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Predicted GO
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR031100 LOG_fam 54 184
No external refs found!