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  5. MA_4979g0010

MA_4979g0010


Description : (q40636|expa2_orysa : 406.0) Expansin-A2 precursor (OsEXPA2) (Alpha-expansin-2) (OsEXP2) (OsaEXPa1.23) (RiExB) (RiExC) - Oryza sativa (Rice) & (at2g40610 : 398.0) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A8 (EXPA8); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A2 (TAIR:AT5G05290.1); Has 2297 Blast hits to 2294 proteins in 186 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 45; Plants - 2187; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). & (reliability: 796.0) & (original description: no original description)


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_4979g0010
Cluster HCCA clusters: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
179212 No alias expansin A15 0.03 Orthogroups_2024-Update
A4A49_04302 No alias expansin-a10 0.05 Orthogroups_2024-Update
A4A49_18887 No alias expansin-a1 0.04 Orthogroups_2024-Update
A4A49_26789 No alias expansin-a3 0.05 Orthogroups_2024-Update
A4A49_38718 No alias expansin-a7 0.03 Orthogroups_2024-Update
A4A49_61517 No alias expansin-a23 0.03 Orthogroups_2024-Update
A4A49_64370 No alias expansin-a1 0.04 Orthogroups_2024-Update
At1g20190 No alias Expansin-A11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU3] 0.03 Orthogroups_2024-Update
At3g15370 No alias Expansin 12 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSN2] 0.04 Orthogroups_2024-Update
At5g05290 No alias Expansin-A2 [Source:UniProtKB/Swiss-Prot;Acc:Q38866] 0.04 Orthogroups_2024-Update
Bradi2g10320 No alias expansin A14 0.03 Orthogroups_2024-Update
Bradi5g04120 No alias expansin 11 0.02 Orthogroups_2024-Update
Brara.B00044.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Brara.B03352.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.D00393.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.D02404.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.D02476.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.E00745.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.G01411.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.G02887.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
GRMZM2G073373 No alias expansin 11 0.02 Orthogroups_2024-Update
GRMZM2G094523 No alias expansin A1 0.04 Orthogroups_2024-Update
GRMZM2G339122 No alias expansin A1 0.02 Orthogroups_2024-Update
Glyma.01G050100 No alias expansin A1 0.04 Orthogroups_2024-Update
Glyma.06G021700 No alias expansin 11 0.03 Orthogroups_2024-Update
Glyma.06G143300 No alias expansin A8 0.03 Orthogroups_2024-Update
Glyma.06G195000 No alias expansin A15 0.02 Orthogroups_2024-Update
HORVU3Hr1G081180.2 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Kfl00012_0440 kfl00012_0440_v1.1 (q7xt39|expb5_orysa : 107.0) Expansin-B5 precursor... 0.02 Orthogroups_2024-Update
LOC_Os01g14650 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g60770 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g16730 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g16839 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g06000 No alias expansin precursor, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os03g21820 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g49410 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10425823g0010 No alias (q852a1|expa7_orysa : 372.0) Expansin-A7 precursor... 0.03 Orthogroups_2024-Update
MA_10429288g0010 No alias (at3g55500 : 364.0) expansin-like protein. Naming... 0.03 Orthogroups_2024-Update
MA_10429288g0020 No alias (at3g55500 : 259.0) expansin-like protein. Naming... 0.04 Orthogroups_2024-Update
MA_10434805g0030 No alias (at2g40610 : 365.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Mp1g22720.1 No alias Expansin-A4 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
PSME_00014026-RA No alias (at1g69530 : 221.0) Member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
PSME_00018428-RA No alias (q40636|expa2_orysa : 402.0) Expansin-A2 precursor... 0.08 Orthogroups_2024-Update
PSME_00018430-RA No alias (at2g40610 : 404.0) member of Alpha-Expansin Gene... 0.05 Orthogroups_2024-Update
PSME_00022187-RA No alias (at1g69530 : 343.0) Member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
PSME_00025836-RA No alias (at2g40610 : 399.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00029310-RA No alias (at1g26770 : 386.0) Encodes an expansin. Naming... 0.05 Orthogroups_2024-Update
PSME_00035760-RA No alias (at2g40610 : 381.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
PSME_00045415-RA No alias (at4g01630 : 291.0) member of Alpha-Expansin Gene... 0.05 Orthogroups_2024-Update
PSME_00050247-RA No alias (at2g40610 : 400.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00051669-RA No alias (at2g40610 : 425.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Potri.004G123200 No alias expansin A1 0.03 Orthogroups_2024-Update
Potri.006G086100 No alias Barwin-like endoglucanases superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G154700 No alias expansin A8 0.03 Orthogroups_2024-Update
Pp1s11_29V6 No alias expansin 2 0.03 Orthogroups_2024-Update
Pp1s191_40V6 No alias alpha expansin xpa5 0.02 Orthogroups_2024-Update
Pp1s223_38V6 No alias alpha expansin xpa5 0.02 Orthogroups_2024-Update
Pp1s246_53V6 No alias alpha-expansin 1 0.06 Orthogroups_2024-Update
Pp1s266_66V6 No alias alpha expansin xpa5 0.03 Orthogroups_2024-Update
Pp1s325_11V6 No alias expa6 gene for putative alpha expansin protein family EXPA6 0.05 Orthogroups_2024-Update
Pp1s33_258V6 No alias alpha expansin xpa5 0.02 Orthogroups_2024-Update
Pp1s34_7V6 No alias alpha-expansin 8 0.06 Orthogroups_2024-Update
Pp1s363_2V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Pp1s75_138V6 No alias alpha-expansin 8 0.05 Orthogroups_2024-Update
Seita.1G318000.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Seita.9G342900.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.001G314600.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.003G444400.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Sobic.007G166500.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.009G173700.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.010G006200.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Solyc03g115320 No alias Expansin (AHRD V3.3 *** Q7X9Q3_SAMNI) 0.03 Orthogroups_2024-Update
Solyc03g115340 No alias Expansin (AHRD V3.3 *** Q7FWM1_9ROSA) 0.04 Orthogroups_2024-Update
Solyc05g007830 No alias expansin12 0.02 Orthogroups_2024-Update
Sopen02g032810 No alias Pollen allergen 0.04 Orthogroups_2024-Update
Sopen03g034340 No alias Pollen allergen 0.02 Orthogroups_2024-Update
Sopen03g034870 No alias Pollen allergen 0.02 Orthogroups_2024-Update
Sopen10g034230 No alias Pollen allergen 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 159 236
IPR009009 RlpA-like_DPBB 61 147
No external refs found!