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  5. Solyc10g078970

Solyc10g078970


Description : LOW QUALITY:Zinc finger family protein (AHRD V3.3 *** B9HA00_POPTR)


Gene families : OG_42_0000024 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000024_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g078970
Cluster HCCA clusters: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
A4A49_18298 No alias zinc finger protein 4 0.03 Orthogroups_2024-Update
At1g68480 No alias Zinc finger protein JAGGED... 0.03 Orthogroups_2024-Update
At1g80730 No alias At1g80730 [Source:UniProtKB/TrEMBL;Acc:Q0V814] 0.03 Orthogroups_2024-Update
At3g23130 No alias Uncharacterized protein At3g23130 (Fragment)... 0.03 Orthogroups_2024-Update
Bradi4g03460 No alias zinc finger protein 7 0.03 Orthogroups_2024-Update
Brara.G01776.1 No alias C2H2 subclass ZFP transcription factor 0.03 Orthogroups_2024-Update
Brara.G02683.1 No alias C2H2 subclass ZFP transcription factor 0.04 Orthogroups_2024-Update
Brara.G02782.1 No alias C2H2 subclass ZFP transcription factor 0.04 Orthogroups_2024-Update
Brara.I00553.1 No alias C2H2 subclass ZFP transcription factor 0.03 Orthogroups_2024-Update
Brara.K00484.1 No alias C2H2 subclass ZFP transcription factor 0.03 Orthogroups_2024-Update
Glyma.01G198700 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G242600 No alias zinc finger protein 4 0.03 Orthogroups_2024-Update
Glyma.05G100900 No alias zinc finger protein 7 0.02 Orthogroups_2024-Update
Glyma.07G135900 No alias zinc-finger protein 10 0.03 Orthogroups_2024-Update
Glyma.12G230200 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Kfl00662_0020 kfl00662_0020_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os07g05900 No alias ZOS7-02 - C2H2 zinc finger protein, expressed 0.03 Orthogroups_2024-Update
MA_357706g0010 No alias (at2g37740 : 102.0) zinc-finger protein 10 (ZFP10);... 0.03 Orthogroups_2024-Update
Sobic.002G037000.2 No alias C2H2 subclass ZFP transcription factor 0.02 Orthogroups_2024-Update
Solyc05g009170 No alias Zinc finger family protein (AHRD V3.3 *** B9HWF8_POPTR) 0.03 Orthogroups_2024-Update
Solyc10g080600 No alias Zinc finger family protein (AHRD V3.3 *** B9HA00_POPTR) 0.04 Orthogroups_2024-Update
Sopen01g001230 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0051321 meiotic cell cycle IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!