Description : (at1g09700 : 83.2) Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.; HYPONASTIC LEAVES 1 (HYL1); CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 2 (TAIR:AT2G28380.1); Has 992 Blast hits to 893 proteins in 320 species: Archae - 14; Bacteria - 506; Metazoa - 117; Fungi - 6; Plants - 270; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). & (reliability: 166.4) & (original description: no original description)
Gene families : OG_42_0000831 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000831_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_53221g0010 | |
Cluster | HCCA clusters: Cluster_109 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Pp1s173_93V6 | No alias | double-stranded rna binding | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Predicted GO |
MF | GO:0004325 | ferrochelatase activity | IEP | Predicted GO |
MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Predicted GO |
CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
CC | GO:0005839 | proteasome core complex | IEP | Predicted GO |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0006783 | heme biosynthetic process | IEP | Predicted GO |
BP | GO:0016567 | protein ubiquitination | IEP | Predicted GO |
CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Predicted GO |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Predicted GO |
CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
BP | GO:0032446 | protein modification by small protein conjugation | IEP | Predicted GO |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Predicted GO |
BP | GO:0042168 | heme metabolic process | IEP | Predicted GO |
BP | GO:0042440 | pigment metabolic process | IEP | Predicted GO |
CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044429 | mitochondrial part | IEP | Predicted GO |
CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
BP | GO:0046148 | pigment biosynthetic process | IEP | Predicted GO |
MF | GO:0070003 | threonine-type peptidase activity | IEP | Predicted GO |
CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Predicted GO |
No external refs found! |