Description : (at2g22070 : 606.0) pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink). & (q76c99|rf1_orysa : 118.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1108.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_56322g0010 | |
Cluster | HCCA clusters: Cluster_7 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi1g36010 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi2g54927 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi3g51740 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.A00680.1 | No alias | RNA editing factor *(MEF29) | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G035330.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os06g02200 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
PSME_00005432-RA | No alias | (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00006511-RA | No alias | (at1g11290 : 568.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00007652-RA | No alias | (at1g11290 : 614.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00008064-RA | No alias | (at3g49170 : 637.0) embryo defective 2261 (EMB2261);... | 0.03 | Orthogroups_2024-Update | |
PSME_00011207-RA | No alias | (at3g63370 : 641.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
PSME_00016248-RA | No alias | (at3g12770 : 631.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
PSME_00021735-RA | No alias | (at4g33170 : 600.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00022325-RA | No alias | (at3g09040 : 700.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00026228-RA | No alias | (at3g57430 : 606.0) Encodes a chloroplast RNA editing... | 0.04 | Orthogroups_2024-Update | |
PSME_00028519-RA | No alias | (at2g22070 : 606.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00036495-RA | No alias | (at1g11290 : 559.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00037497-RA | No alias | (at4g13650 : 692.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00038145-RA | No alias | (at5g52630 : 598.0) Encodes a member of the DYW... | 0.03 | Orthogroups_2024-Update | |
PSME_00042881-RA | No alias | (at4g37170 : 685.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00052953-RA | No alias | (at4g13650 : 635.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00056779-RA | No alias | (at4g13650 : 709.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00056843-RA | No alias | (at4g02750 : 457.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00056947-RA | No alias | (at2g22070 : 647.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00056965-RA | No alias | (at4g39530 : 592.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
Sobic.002G172500.3 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Solyc11g065250 | No alias | Pentatricopeptide repeat superfamily protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004014 | adenosylmethionine decarboxylase activity | IEP | Predicted GO |
BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
BP | GO:0006595 | polyamine metabolic process | IEP | Predicted GO |
BP | GO:0006596 | polyamine biosynthetic process | IEP | Predicted GO |
BP | GO:0006597 | spermine biosynthetic process | IEP | Predicted GO |
BP | GO:0008215 | spermine metabolic process | IEP | Predicted GO |
BP | GO:0008216 | spermidine metabolic process | IEP | Predicted GO |
BP | GO:0008295 | spermidine biosynthetic process | IEP | Predicted GO |
BP | GO:0009309 | amine biosynthetic process | IEP | Predicted GO |
MF | GO:0016597 | amino acid binding | IEP | Predicted GO |
MF | GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | IEP | Predicted GO |
MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Predicted GO |
CC | GO:0030117 | membrane coat | IEP | Predicted GO |
MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
BP | GO:0042401 | cellular biogenic amine biosynthetic process | IEP | Predicted GO |
MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
BP | GO:0097164 | ammonium ion metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 364 | 386 |
IPR002885 | Pentatricopeptide_repeat | 636 | 660 |
IPR002885 | Pentatricopeptide_repeat | 162 | 187 |
IPR002885 | Pentatricopeptide_repeat | 131 | 158 |
IPR002885 | Pentatricopeptide_repeat | 465 | 490 |
IPR002885 | Pentatricopeptide_repeat | 263 | 288 |
IPR002885 | Pentatricopeptide_repeat | 566 | 589 |
IPR032867 | DYW_dom | 664 | 788 |
IPR002885 | Pentatricopeptide_repeat | 390 | 436 |
IPR002885 | Pentatricopeptide_repeat | 491 | 537 |
IPR002885 | Pentatricopeptide_repeat | 189 | 235 |
IPR002885 | Pentatricopeptide_repeat | 289 | 336 |
No external refs found! |