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  5. MA_56660g0010

MA_56660g0010


Description : (at2g13600 : 517.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 132.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1034.0) & (original description: no original description)


Gene families : OG_42_0012016 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012016_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_56660g0010
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
PSME_00013854-RA No alias (at2g13600 : 421.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00039121-RA No alias (at1g11290 : 570.0) Pentatricopeptide Repeat Protein... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 580 654
IPR002885 Pentatricopeptide_repeat 72 118
IPR002885 Pentatricopeptide_repeat 407 455
IPR002885 Pentatricopeptide_repeat 174 220
IPR002885 Pentatricopeptide_repeat 277 307
IPR002885 Pentatricopeptide_repeat 148 172
IPR002885 Pentatricopeptide_repeat 308 338
IPR002885 Pentatricopeptide_repeat 481 505
IPR002885 Pentatricopeptide_repeat 380 406
IPR002885 Pentatricopeptide_repeat 249 274
No external refs found!