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  5. MA_56714g0010

MA_56714g0010


Description : (at3g12770 : 596.0) Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.; mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (q76c99|rf1_orysa : 97.1) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1086.0) & (original description: no original description)


Gene families : OG_42_0010960 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010960_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_56714g0010
Cluster HCCA clusters: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
HORVU3Hr1G067650.1 No alias Unknown function 0.04 Orthogroups_2024-Update
PSME_00016520-RA No alias (at3g57430 : 508.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
PSME_00056640-RA No alias (at3g12770 : 592.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 442 489
IPR002885 Pentatricopeptide_repeat 341 384
IPR002885 Pentatricopeptide_repeat 138 178
IPR032867 DYW_dom 615 739
IPR002885 Pentatricopeptide_repeat 517 540
IPR002885 Pentatricopeptide_repeat 239 265
IPR002885 Pentatricopeptide_repeat 315 340
IPR002885 Pentatricopeptide_repeat 416 441
IPR002885 Pentatricopeptide_repeat 211 237
No external refs found!