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  5. MA_57048g0010

MA_57048g0010


Description : (at3g09040 : 636.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 73401 Blast hits to 14698 proteins in 289 species: Archae - 0; Bacteria - 19; Metazoa - 251; Fungi - 280; Plants - 71776; Viruses - 0; Other Eukaryotes - 1075 (source: NCBI BLink). & (q76c99|rf1_orysa : 166.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1272.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_57048g0010
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G019689 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G020008 No alias mitochondrial RNAediting factor 1 0.02 Orthogroups_2024-Update
GRMZM2G022884 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G031588 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G060337 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G073017 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G163396 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G168378 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G331779 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G430710 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G456114 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM5G862936 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
MA_465411g0010 No alias (at4g18750 : 483.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00001942-RA No alias (at3g57430 : 689.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00002078-RA No alias (at3g12770 : 644.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00002349-RA No alias (at3g12770 : 612.0) Encodes a pentatricopeptide repeat... 0.06 Orthogroups_2024-Update
PSME_00002609-RA No alias (at1g11290 : 641.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00002641-RA No alias (at1g11290 : 548.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00005130-RA No alias (at4g33990 : 552.0) embryo defective 2758 (EMB2758);... 0.04 Orthogroups_2024-Update
PSME_00005432-RA No alias (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00006107-RA No alias (at1g11290 : 668.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00006511-RA No alias (at1g11290 : 568.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
PSME_00007181-RA No alias (at3g03580 : 567.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00007652-RA No alias (at1g11290 : 614.0) Pentatricopeptide Repeat Protein... 0.06 Orthogroups_2024-Update
PSME_00007848-RA No alias (at3g03580 : 694.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00010401-RA No alias (at4g18750 : 645.0) Encodes a pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
PSME_00011140-RA No alias (at1g11290 : 575.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00011207-RA No alias (at3g63370 : 641.0) Encodes a chloroplast RNA editing... 0.05 Orthogroups_2024-Update
PSME_00013800-RA No alias (at2g03880 : 405.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00016247-RA No alias (at3g12770 : 627.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
PSME_00016248-RA No alias (at3g12770 : 631.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
PSME_00017531-RA No alias (at1g11290 : 661.0) Pentatricopeptide Repeat Protein... 0.06 Orthogroups_2024-Update
PSME_00022688-RA No alias (at3g46790 : 282.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00022741-RA No alias (at4g18750 : 598.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00024026-RA No alias (at4g20770 : 565.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00024530-RA No alias (at4g18750 : 707.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00025196-RA No alias (at3g03580 : 681.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00028519-RA No alias (at2g22070 : 606.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00031955-RA No alias (at1g11290 : 710.0) Pentatricopeptide Repeat Protein... 0.06 Orthogroups_2024-Update
PSME_00032333-RA No alias (at4g18750 : 689.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00032959-RA No alias (at3g46790 : 529.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00033049-RA No alias (at1g11290 : 583.0) Pentatricopeptide Repeat Protein... 0.08 Orthogroups_2024-Update
PSME_00035769-RA No alias (at4g13650 : 702.0) Pentatricopeptide repeat (PPR)... 0.09 Orthogroups_2024-Update
PSME_00036103-RA No alias (at2g13600 : 422.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00036495-RA No alias (at1g11290 : 559.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00039458-RA No alias (at4g13650 : 677.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00041541-RA No alias (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00042924-RA No alias (at3g57430 : 662.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
PSME_00046650-RA No alias (at4g21300 : 573.0) Tetratricopeptide repeat (TPR)-like... 0.06 Orthogroups_2024-Update
PSME_00051353-RA No alias (at4g13650 : 695.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00051698-RA No alias (at3g57430 : 715.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00052953-RA No alias (at4g13650 : 635.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00055422-RA No alias (at2g13600 : 420.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00056424-RA No alias (at2g22070 : 461.0) pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
PSME_00056594-RA No alias (at3g53360 : 383.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00056663-RA No alias (at3g13770 : 545.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00056779-RA No alias (at4g13650 : 709.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00056843-RA No alias (at4g02750 : 457.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00057187-RA No alias (at1g11290 : 659.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
PSME_00057248-RA No alias (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.02 Orthogroups_2024-Update
Sobic.001G149100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G034400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G358900.3 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
Sobic.003G047400.1 No alias RNA editing factor *(OTP81) 0.03 Orthogroups_2024-Update
Sobic.003G142400.2 No alias RNA editing factor *(PGN) 0.04 Orthogroups_2024-Update
Sobic.003G333200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G051600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G141600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G312000.1 No alias RNA editing factor *(CLB19) 0.03 Orthogroups_2024-Update
Sobic.006G069100.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G208400.1 No alias RNA editing factor *(REME1) 0.02 Orthogroups_2024-Update
Sobic.008G009000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G116400.4 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.03 Orthogroups_2024-Update
Sobic.009G155400.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G067000.1 No alias RNA editing factor *(MEF29) 0.03 Orthogroups_2024-Update
Sobic.010G232700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G258600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen10g003810 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 527 573
IPR002885 Pentatricopeptide_repeat 729 777
IPR002885 Pentatricopeptide_repeat 223 271
IPR002885 Pentatricopeptide_repeat 425 473
IPR002885 Pentatricopeptide_repeat 22 69
IPR002885 Pentatricopeptide_repeat 325 372
IPR002885 Pentatricopeptide_repeat 123 169
IPR002885 Pentatricopeptide_repeat 628 675
IPR002885 Pentatricopeptide_repeat 803 827
IPR002885 Pentatricopeptide_repeat 703 728
IPR002885 Pentatricopeptide_repeat 601 626
IPR002885 Pentatricopeptide_repeat 298 322
No external refs found!