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  5. MA_57592g0010

MA_57592g0010


Description : (at3g09060 : 591.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 58888 Blast hits to 14270 proteins in 310 species: Archae - 10; Bacteria - 38; Metazoa - 658; Fungi - 1156; Plants - 55027; Viruses - 0; Other Eukaryotes - 1999 (source: NCBI BLink). & (q76c99|rf1_orysa : 326.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1182.0) & (original description: no original description)


Gene families : OG_42_0004106 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004106_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_57592g0010
Cluster HCCA clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Bradi2g38481 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g46220 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Brara.F03642.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU1Hr1G016190.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.3G051300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.5G265700.1 No alias Unknown function 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0007165 signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 100 159
IPR002885 Pentatricopeptide_repeat 425 456
IPR002885 Pentatricopeptide_repeat 389 422
IPR002885 Pentatricopeptide_repeat 529 560
IPR002885 Pentatricopeptide_repeat 567 596
IPR002885 Pentatricopeptide_repeat 603 651
IPR002885 Pentatricopeptide_repeat 465 511
IPR002885 Pentatricopeptide_repeat 253 302
IPR002885 Pentatricopeptide_repeat 323 372
IPR002885 Pentatricopeptide_repeat 183 232
No external refs found!