MA_6078786g0010

Description : (p54347|h2b4_chlre : 155.0) Histone H2B.4 (H2B-IV) - Chlamydomonas reinhardtii & (at3g45980 : 154.0) Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases as well as the UBC1 and UBC2 E2 ubiquitin conjugating enzymes. Lysine 146 appears to be the site of the ubiquitin addition.; HTB9; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G07790.1); Has 3616 Blast hits to 3469 proteins in 351 species: Archae - 0; Bacteria - 64; Metazoa - 2275; Fungi - 213; Plants - 487; Viruses - 0; Other Eukaryotes - 577 (source: NCBI BLink). & (reliability: 308.0) & (original description: no original description)

Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_6078786g0010
Cluster	HCCA clusters: Cluster_113

Target	Alias	Description	ECC score	Gene Family Method
At3g53650	No alias	Histone H2B.8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFF6]	0.03	Orthogroups_2024-Update
Cre06.g264800	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g266750	No alias	Histone superfamily protein	0.01	Orthogroups_2024-Update
Cre06.g273850	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g274250	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g274750	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g276900	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g504550	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g504700	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g506200	No alias	Histone superfamily protein	0.01	Orthogroups_2024-Update
Cre17.g708600	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre17.g711750	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G141432	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.12G179100	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
HORVU1Hr1G078480.6	No alias	histone *(H2B)	0.04	Orthogroups_2024-Update
HORVU3Hr1G013680.1	No alias	histone *(H2B)	0.04	Orthogroups_2024-Update
HORVU3Hr1G086610.4	No alias	histone *(H2B)	0.04	Orthogroups_2024-Update
HORVU4Hr1G009040.2	No alias	histone *(H2B)	0.04	Orthogroups_2024-Update
HORVU5Hr1G094500.1	No alias	histone *(H2B)	0.04	Orthogroups_2024-Update
HORVU7Hr1G110310.1	No alias	histone *(H2B)	0.04	Orthogroups_2024-Update
MA_10435143g0010	No alias	(at5g22880 : 172.0) Encodes a histone 2B (H2B) protein....	0.04	Orthogroups_2024-Update
MA_10436516g0010	No alias	(at3g45980 : 175.0) Encodes a histone 2B (H2B) protein....	0.03	Orthogroups_2024-Update
Mp6g07010.1	No alias	histone (H2B)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004512	inositol-3-phosphate synthase activity	IEP	Predicted GO
BP	GO:0006020	inositol metabolic process	IEP	Predicted GO
BP	GO:0006021	inositol biosynthetic process	IEP	Predicted GO
BP	GO:0006066	alcohol metabolic process	IEP	Predicted GO
BP	GO:0006644	phospholipid metabolic process	IEP	Predicted GO
BP	GO:0008654	phospholipid biosynthetic process	IEP	Predicted GO
MF	GO:0010181	FMN binding	IEP	Predicted GO
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Predicted GO
MF	GO:0016872	intramolecular lyase activity	IEP	Predicted GO
BP	GO:0019751	polyol metabolic process	IEP	Predicted GO
BP	GO:0046165	alcohol biosynthetic process	IEP	Predicted GO
BP	GO:0046173	polyol biosynthetic process	IEP	Predicted GO
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Predicted GO
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	21	140

External Links

No external refs found!

MA_6078786g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation