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Description : (at2g13600 : 478.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 110.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 888.0) & (original description: no original description)
Gene families : OG_42_0022411 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_6126791g0010 | |
| Cluster | HCCA clusters: Cluster_83 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| PSME_00036476-RA | No alias | (at2g13600 : 437.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0007034 | vacuolar transport | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 302 | 329 |
| IPR002885 | Pentatricopeptide_repeat | 601 | 630 |
| IPR002885 | Pentatricopeptide_repeat | 172 | 197 |
| IPR002885 | Pentatricopeptide_repeat | 331 | 355 |
| IPR002885 | Pentatricopeptide_repeat | 199 | 226 |
| IPR002885 | Pentatricopeptide_repeat | 435 | 460 |
| IPR002885 | Pentatricopeptide_repeat | 230 | 260 |
| IPR002885 | Pentatricopeptide_repeat | 536 | 558 |
| IPR002885 | Pentatricopeptide_repeat | 359 | 406 |
| IPR002885 | Pentatricopeptide_repeat | 461 | 508 |
| IPR002885 | Pentatricopeptide_repeat | 95 | 142 |
| No external refs found! |