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  5. MA_62815g0010

MA_62815g0010


Description : (at1g25360 : 760.0) Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 48992 Blast hits to 14461 proteins in 282 species: Archae - 2; Bacteria - 7; Metazoa - 148; Fungi - 100; Plants - 48130; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink). & (q76c99|rf1_orysa : 140.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1520.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_62815g0010
Cluster HCCA clusters: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
At2g17210 No alias Pentatricopeptide repeat-containing protein At2g17210... 0.04 Orthogroups_2024-Update
Bradi2g55230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g57730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G102000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc03g097850 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g067210 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen00g008750 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen01g032860 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen02g033370 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g002990 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen09g035030 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g001910 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g029050 No alias PPR repeat family 0.02 Orthogroups_2024-Update
evm.model.tig00000808.10 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 707 831
IPR002885 Pentatricopeptide_repeat 433 480
IPR002885 Pentatricopeptide_repeat 164 211
IPR002885 Pentatricopeptide_repeat 303 348
IPR002885 Pentatricopeptide_repeat 534 581
IPR002885 Pentatricopeptide_repeat 611 632
IPR002885 Pentatricopeptide_repeat 272 299
IPR002885 Pentatricopeptide_repeat 508 533
IPR002885 Pentatricopeptide_repeat 376 402
IPR002885 Pentatricopeptide_repeat 107 133
IPR002885 Pentatricopeptide_repeat 674 703
No external refs found!