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  5. MA_62865g0010

MA_62865g0010


Description : (at2g36710 : 276.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36700.1); Has 6628 Blast hits to 4257 proteins in 552 species: Archae - 11; Bacteria - 922; Metazoa - 2127; Fungi - 511; Plants - 1794; Viruses - 17; Other Eukaryotes - 1246 (source: NCBI BLink). & (p83948|pme3_citsi : 174.0) Pectinesterase-3 precursor (EC 3.1.1.11) (Pectin methylesterase 3) (PE 3) - Citrus sinensis (Sweet orange) & (reliability: 552.0) & (original description: no original description)


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_62865g0010
Cluster HCCA clusters: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
Brara.B00244.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Brara.B00839.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Glyma.08G033000 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.14G014400 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
PSME_00007923-RA No alias (at5g19730 : 228.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.006G137100 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.008G104800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s215_36V6 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Pp1s236_72V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s325_49V6 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Pp1s67_6V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Sobic.003G292100.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Solyc07g065360 No alias Pectinesterase (AHRD V3.3 *** K4CHL4_SOLLC) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019439 aromatic compound catabolic process IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0034655 nucleobase-containing compound catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predicted GO
BP GO:0046700 heterocycle catabolic process IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:1901361 organic cyclic compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 61 352
No external refs found!