MA_63040g0010

Description : (at1g55310 : 80.5) Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein.; SC35-like splicing factor 33 (SR33); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1). & (reliability: 161.0) & (original description: no original description)

Gene families : OG_42_0000852 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000852_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_63040g0010
Cluster	HCCA clusters: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
A4A49_31385	No alias	serinearginine-rich sc35-like splicing factor scl30a	0.02	Orthogroups_2024-Update
GRMZM2G426229	No alias	SC35-like splicing factor 30A	0.03	Orthogroups_2024-Update
Glyma.09G104200	No alias	SC35-like splicing factor 30A	0.04	Orthogroups_2024-Update
Potri.001G006400	No alias	SC35-like splicing factor 30A	0.03	Orthogroups_2024-Update
Sobic.001G358000.1	No alias	RNA splicing factor *(SCL28/30/33)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001671	ATPase activator activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
MF	GO:0008047	enzyme activator activity	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
MF	GO:0051082	unfolded protein binding	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	48	82

External Links

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MA_63040g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation