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  5. MA_63122g0010

MA_63122g0010


Description : (at1g23460 : 261.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 4300 Blast hits to 4283 proteins in 531 species: Archae - 4; Bacteria - 1235; Metazoa - 14; Fungi - 1418; Plants - 1493; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). & (p35336|pglr_actch : 242.0) Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase) - Actinidia chinensis (Kiwi) (Yangtao) & (reliability: 522.0) & (original description: no original description)


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_63122g0010
Cluster HCCA clusters: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
A4A49_04568 No alias polygalacturonase-2 0.02 Orthogroups_2024-Update
A4A49_14444 No alias putative polygalacturonase 0.04 Orthogroups_2024-Update
Brara.G00978.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
GRMZM2G004500 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os03g59330 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
MA_96282g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00033065-RA No alias (at1g80170 : 428.0) Pectin lyase-like superfamily... 0.05 Orthogroups_2024-Update
Sopen03g032290 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update
Sopen10g030820 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update
Sopen12g004420 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 87 165
IPR000743 Glyco_hydro_28 170 334
No external refs found!