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  5. Solyc10g080550

Solyc10g080550


Description : Protein trichome birefringence (AHRD V3.3 *** TBR_ARATH)


Gene families : OG_42_0000293 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000293_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g080550
Cluster HCCA clusters: Cluster_261

Target Alias Description ECC score Gene Family Method Actions
Brara.B00219.1 No alias polysaccharide O-acetyltransferase *(TBR) 0.04 Orthogroups_2024-Update
Brara.B03486.1 No alias polysaccharide O-acetyltransferase *(TBR) 0.04 Orthogroups_2024-Update
HORVU5Hr1G041030.2 No alias rhamnogalacturonan-I O-acetyltransferase *(TBL) 0.03 Orthogroups_2024-Update
Potri.006G193900 No alias Plant protein of unknown function (DUF828) 0.03 Orthogroups_2024-Update
Pp1s309_78V6 No alias af361591_1 at5g06230 mbl20_11 0.03 Orthogroups_2024-Update
Pp1s57_228V6 No alias unknown [Picea sitchensis] 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000930 gamma-tubulin complex IEP Predicted GO
CC GO:0000931 gamma-tubulin large complex IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
CC GO:0008274 gamma-tubulin ring complex IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0031503 protein-containing complex localization IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
BP GO:0033566 gamma-tubulin complex localization IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034629 cellular protein-containing complex localization IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044450 microtubule organizing center part IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
InterPro domains Description Start Stop
IPR025846 PMR5_N_dom 225 276
IPR026057 PC-Esterase 278 563
No external refs found!