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  5. MA_6409g0010

MA_6409g0010


Description : (original description: no original description)


Gene families : OG_42_0000689 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000689_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_6409g0010
Cluster HCCA clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
27494 No alias winged-helix DNA-binding transcription factor family protein 0.02 Orthogroups_2024-Update
At2g18050 No alias HIS1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VX64] 0.03 Orthogroups_2024-Update
Bradi1g55260 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
Brara.I01061.1 No alias linker histone *(H1) 0.02 Orthogroups_2024-Update
GRMZM2G080274 No alias histone H1-3 0.03 Orthogroups_2024-Update
GRMZM2G401308 No alias winged-helix DNA-binding transcription factor family protein 0.04 Orthogroups_2024-Update
Glyma.10G033100 No alias winged-helix DNA-binding transcription factor family protein 0.04 Orthogroups_2024-Update
Glyma.10G163300 No alias winged-helix DNA-binding transcription factor family protein 0.05 Orthogroups_2024-Update
Glyma.11G075500 No alias histone H1-3 0.02 Orthogroups_2024-Update
Glyma.20G225900 No alias winged-helix DNA-binding transcription factor family protein 0.05 Orthogroups_2024-Update
HORVU2Hr1G094390.5 No alias linker histone *(H1) 0.04 Orthogroups_2024-Update
HORVU2Hr1G094400.5 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
HORVU5Hr1G106550.2 No alias linker histone *(H1) 0.04 Orthogroups_2024-Update
HORVU5Hr1G106610.2 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
HORVU5Hr1G106730.2 No alias linker histone *(H1) 0.04 Orthogroups_2024-Update
HORVU7Hr1G012850.1 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
LOC_Os03g58470 No alias retrotransposon protein, putative, Ty3-gypsy subclass, expressed 0.05 Orthogroups_2024-Update
LOC_Os07g08710 No alias AT hook-containing DNA-binding protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_12062g0020 No alias (p27806|h1_wheat : 89.7) Histone H1 - Triticum aestivum... 0.03 Orthogroups_2024-Update
MA_196776g0010 No alias (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00002381-RA No alias (p23444|h1_maize : 102.0) Histone H1 - Zea mays (Maize)... 0.02 Orthogroups_2024-Update
PSME_00009292-RA No alias (p23444|h1_maize : 104.0) Histone H1 - Zea mays (Maize)... 0.04 Orthogroups_2024-Update
PSME_00018264-RA No alias (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00053828-RA No alias (original description: no original description) 0.02 Orthogroups_2024-Update
Potri.005G219800 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
Solyc06g084020 No alias histone H1 0.03 Orthogroups_2024-Update
evm.model.contig_2062.24 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006334 nucleosome assembly IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004560 alpha-L-fucosidase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004860 protein kinase inhibitor activity IEP Predicted GO
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0007050 cell cycle arrest IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015928 fucosidase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019210 kinase inhibitor activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 114 176
No external refs found!