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  5. MA_65477g0010

MA_65477g0010


Description : (at3g62470 : 535.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 39079 Blast hits to 12185 proteins in 290 species: Archae - 4; Bacteria - 32; Metazoa - 449; Fungi - 607; Plants - 36694; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink). & (q76c99|rf1_orysa : 127.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1070.0) & (original description: no original description)


Gene families : OG_42_0000934 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000934_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_65477g0010
Cluster HCCA clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G013519 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G264500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
PSME_00021412-RA No alias (at3g62470 : 474.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00048775-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
Solyc01g097130 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update
Sopen01g040810 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 491 549
IPR002885 Pentatricopeptide_repeat 362 411
IPR002885 Pentatricopeptide_repeat 436 464
IPR002885 Pentatricopeptide_repeat 333 358
IPR002885 Pentatricopeptide_repeat 576 604
IPR002885 Pentatricopeptide_repeat 298 325
IPR002885 Pentatricopeptide_repeat 262 290
No external refs found!