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Description : (at5g39710 : 294.0) EMBRYO DEFECTIVE 2745 (EMB2745); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 65335 Blast hits to 15466 proteins in 320 species: Archae - 6; Bacteria - 88; Metazoa - 1398; Fungi - 1479; Plants - 59659; Viruses - 0; Other Eukaryotes - 2705 (source: NCBI BLink). & (q76c99|rf1_orysa : 269.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 556.0) & (original description: no original description)
Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_65832g0010 | |
| Cluster | HCCA clusters: Cluster_165 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| PSME_00012029-RA | No alias | (at5g41170 : 136.0) Pentatricopeptide repeat (PPR-like)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00055403-RA | No alias | (at3g22470 : 280.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006644 | phospholipid metabolic process | IEP | Predicted GO |
| BP | GO:0006650 | glycerophospholipid metabolic process | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| BP | GO:0030258 | lipid modification | IEP | Predicted GO |
| BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | Predicted GO |
| BP | GO:0046834 | lipid phosphorylation | IEP | Predicted GO |
| BP | GO:0046854 | phosphatidylinositol phosphorylation | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 100 | 128 |
| IPR002885 | Pentatricopeptide_repeat | 343 | 375 |
| IPR002885 | Pentatricopeptide_repeat | 449 | 477 |
| IPR002885 | Pentatricopeptide_repeat | 203 | 235 |
| IPR002885 | Pentatricopeptide_repeat | 239 | 271 |
| IPR002885 | Pentatricopeptide_repeat | 70 | 97 |
| IPR002885 | Pentatricopeptide_repeat | 382 | 431 |
| IPR002885 | Pentatricopeptide_repeat | 137 | 186 |
| IPR002885 | Pentatricopeptide_repeat | 277 | 326 |
| No external refs found! |