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  5. MA_6622g0010

MA_6622g0010


Description : (at5g46190 : 163.0) RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G18375.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 326.0) & (original description: no original description)


Gene families : OG_42_0000643 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000643_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_6622g0010
Cluster HCCA clusters: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
Bradi4g34220 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
GRMZM2G126120 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
GRMZM2G158884 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.09G235900 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Mp3g04880.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Orthogroups_2024-Update
PSME_00004511-RA No alias (at5g15270 : 293.0) RNA-binding KH domain-containing... 0.03 Orthogroups_2024-Update
PSME_00036946-RA No alias (at5g15270 : 332.0) RNA-binding KH domain-containing... 0.05 Orthogroups_2024-Update
PSME_00037484-RA No alias (at5g53060 : 276.0) RNA-binding KH domain-containing... 0.04 Orthogroups_2024-Update
Potri.007G116300 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Potri.010G167100 No alias RNA-binding KH domain-containing protein 0.02 Orthogroups_2024-Update
Seita.9G385500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen03g006980 No alias KH domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004455 ketol-acid reductoisomerase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 322 361
IPR004088 KH_dom_type_1 59 112
IPR004088 KH_dom_type_1 144 211
No external refs found!