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  5. Solyc10g080930

Solyc10g080930


Description : Transcription elongation factor (TFIIS) family protein (AHRD V3.3 *** G7L5V2_MEDTR)


Gene families : OG_42_0001427 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001427_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g080930
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G120971 No alias Transcription elongation factor (TFIIS) family protein 0.03 Orthogroups_2024-Update
LOC_Os03g24950 No alias expressed protein 0.02 Orthogroups_2024-Update
MA_47820g0010 No alias (at5g05140 : 229.0) Transcription elongation factor... 0.03 Orthogroups_2024-Update
Seita.3G241800.1 No alias component *(MED26) of MEDIATOR transcription co-activator complex 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006090 pyruvate metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Predicted GO
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP Predicted GO
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP Predicted GO
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR017923 TFIIS_N 155 204
No external refs found!