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  5. MA_67032g0010

MA_67032g0010


Description : (at3g12770 : 625.0) Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.; mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (q76c99|rf1_orysa : 128.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1250.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_67032g0010
Cluster HCCA clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
Bradi1g72290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Brara.F00580.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.F03349.1 No alias RNA editing factor *(REME1) & RNA editing factor *(OTP87) 0.04 Orthogroups_2024-Update
Brara.I02594.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.06G322500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os01g41650 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_11074g0010 No alias (at3g57430 : 561.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
MA_668740g0020 No alias (at3g13770 : 627.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00001719-RA No alias (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00009521-RA No alias (at4g18750 : 696.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00016653-RA No alias (at3g02010 : 685.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00021735-RA No alias (at4g33170 : 600.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00022686-RA No alias (at1g11290 : 619.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00024530-RA No alias (at4g18750 : 707.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00032959-RA No alias (at3g46790 : 529.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00036495-RA No alias (at1g11290 : 559.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00038145-RA No alias (at5g52630 : 598.0) Encodes a member of the DYW... 0.03 Orthogroups_2024-Update
PSME_00052680-RA No alias (at3g46790 : 263.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
Seita.5G381200.1 No alias RNA editing factor *(CRR2) 0.02 Orthogroups_2024-Update
Solyc07g008480 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen04g008620 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen10g003810 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen10g030830 No alias PPR repeat 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 85 128
IPR032867 DYW_dom 639 759
IPR002885 Pentatricopeptide_repeat 263 310
IPR002885 Pentatricopeptide_repeat 162 210
IPR002885 Pentatricopeptide_repeat 466 513
IPR002885 Pentatricopeptide_repeat 365 412
IPR002885 Pentatricopeptide_repeat 541 564
No external refs found!