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  5. MA_68479g0010

MA_68479g0010


Description : (at1g62910 : 405.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G63150.1); Has 124657 Blast hits to 15540 proteins in 305 species: Archae - 10; Bacteria - 122; Metazoa - 2303; Fungi - 2464; Plants - 114740; Viruses - 0; Other Eukaryotes - 5018 (source: NCBI BLink). & (q76c99|rf1_orysa : 358.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 810.0) & (original description: no original description)


Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_68479g0010
Cluster HCCA clusters: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
441332 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
MA_122851g0010 No alias (at3g22470 : 317.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
MA_78481g0010 No alias (at1g63130 : 360.0) Transacting siRNA generating locus.... 0.05 Orthogroups_2024-Update
MA_959553g0010 No alias (at3g22470 : 392.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00012029-RA No alias (at5g41170 : 136.0) Pentatricopeptide repeat (PPR-like)... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 137 186
IPR002885 Pentatricopeptide_repeat 67 116
IPR002885 Pentatricopeptide_repeat 417 466
IPR002885 Pentatricopeptide_repeat 487 536
IPR002885 Pentatricopeptide_repeat 277 326
IPR002885 Pentatricopeptide_repeat 557 606
IPR002885 Pentatricopeptide_repeat 347 396
IPR002885 Pentatricopeptide_repeat 207 256
No external refs found!