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  5. MA_68718g0020

MA_68718g0020


Description : (at4g02750 : 556.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 158.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1112.0) & (original description: no original description)


Gene families : OG_42_0011490 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0011490_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_68718g0020
Cluster HCCA clusters: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
109195 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 471 494
IPR002885 Pentatricopeptide_repeat 85 110
IPR002885 Pentatricopeptide_repeat 346 376
IPR002885 Pentatricopeptide_repeat 284 310
IPR002885 Pentatricopeptide_repeat 705 729
IPR002885 Pentatricopeptide_repeat 377 406
IPR002885 Pentatricopeptide_repeat 501 527
IPR002885 Pentatricopeptide_repeat 439 464
IPR002885 Pentatricopeptide_repeat 409 437
IPR002885 Pentatricopeptide_repeat 211 259
IPR002885 Pentatricopeptide_repeat 111 158
IPR002885 Pentatricopeptide_repeat 630 678
IPR002885 Pentatricopeptide_repeat 530 574
IPR032867 DYW_dom 804 862
IPR002885 Pentatricopeptide_repeat 311 341
No external refs found!