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  5. MA_6985771g0010

MA_6985771g0010


Description : (at5g03240 : 211.0) encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.; polyubiquitin 3 (UBQ3); INVOLVED IN: protein modification process, response to UV-B, response to light stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 26684 Blast hits to 7218 proteins in 726 species: Archae - 0; Bacteria - 80; Metazoa - 12490; Fungi - 3021; Plants - 5505; Viruses - 651; Other Eukaryotes - 4937 (source: NCBI BLink). & (p69326|ubiq_wheat : 150.0) Ubiquitin - Triticum aestivum (Wheat) & (reliability: 422.0) & (original description: no original description)


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_6985771g0010
Cluster HCCA clusters: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
173723 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
227280 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
228943 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Brara.I02135.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Brara.J02833.1 No alias UBQ ubiquitin-fold protein 0.04 Orthogroups_2024-Update
Glyma.13G138600 No alias ubiquitin 4 0.03 Orthogroups_2024-Update
HORVU4Hr1G065100.3 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Kfl00013_0160 kfl00013_0160_v1.... (at5g03240 : 110.0) encodes ubiquitin that is attached... 0.02 Orthogroups_2024-Update
Pp1s351_6V6 No alias polyubiquitin containing 7 ubiquitin monomers 0.02 Orthogroups_2024-Update
Sobic.004G050000.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sobic.004G050100.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sopen07g032270 No alias Ubiquitin family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 1 28
IPR000626 Ubiquitin_dom 33 104
No external refs found!