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  5. MA_70145g0010

MA_70145g0010


Description : (at4g16740 : 253.0) Encodes an (E,E)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E,E)-alpha-farnesene biosynthesis because the precursor of this product, FPP, is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect <i>Plutella xylostella</i>. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity.; terpene synthase 03 (TPS03); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase-like sequence-1,8-cineole (TAIR:AT3G25820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p59287|cass_ricco : 253.0) Casbene synthase, chloroplast precursor (EC 4.2.3.8) - Ricinus communis (Castor bean) & (reliability: 506.0) & (original description: no original description)


Gene families : OG_42_0000258 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_70145g0010
Cluster HCCA clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Brara.C02651.1 No alias EC_4.2 carbon-oxygen lyase &... 0.03 Orthogroups_2024-Update
Glyma.12G102000 No alias terpene synthase-like sequence-1,8-cineole 0.03 Orthogroups_2024-Update
Glyma.12G197500 No alias terpene synthase 02 0.03 Orthogroups_2024-Update
MA_10435955g0010 No alias (o04408|ksa_pea : 162.0) Ent-kaurene synthase A,... 0.05 Orthogroups_2024-Update
MA_111325g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_17608g0020 No alias (at4g16740 : 180.0) Encodes an (E,E)-alpha-farnesene... 0.04 Orthogroups_2024-Update
MA_491032g0010 No alias (at4g02780 : 134.0) Catalyzes the conversion of... 0.04 Orthogroups_2024-Update
MA_8002141g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00003264-RA No alias (at4g02780 : 395.0) Catalyzes the conversion of... 0.03 Orthogroups_2024-Update
PSME_00003535-RA No alias (p59287|cass_ricco : 266.0) Casbene synthase,... 0.03 Orthogroups_2024-Update
PSME_00008408-RA No alias (at4g02780 : 401.0) Catalyzes the conversion of... 0.03 Orthogroups_2024-Update
PSME_00010279-RA No alias (at4g02780 : 364.0) Catalyzes the conversion of... 0.05 Orthogroups_2024-Update
PSME_00012291-RA No alias (p93665|dcs1_goshi : 240.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
PSME_00015748-RA No alias (p59287|cass_ricco : 234.0) Casbene synthase,... 0.03 Orthogroups_2024-Update
PSME_00025979-RA No alias (p93665|dcs1_goshi : 237.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
PSME_00029104-RA No alias (p59287|cass_ricco : 216.0) Casbene synthase,... 0.03 Orthogroups_2024-Update
PSME_00034478-RA No alias (at3g25810 : 192.0) Terpenoid cyclases/Protein... 0.03 Orthogroups_2024-Update
PSME_00044370-RA No alias (at4g16730 : 128.0) In the Col ecotype, no functional... 0.04 Orthogroups_2024-Update
Potri.011G031800 No alias terpene synthase-like sequence-1,8-cineole 0.03 Orthogroups_2024-Update
Potri.T072900 No alias terpene synthase-like sequence-1,8-cineole 0.02 Orthogroups_2024-Update
Solyc01g105900 No alias Beta myrcene/limonene synthase (AHRD V3.3 *** G1JUH4_SOLLC) 0.03 Orthogroups_2024-Update
Solyc01g105960 No alias (E)-beta-ocimene synthase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA InterProScan predictions
MF GO:0010333 terpene synthase activity IEA InterProScan predictions
MF GO:0016829 lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR005630 Terpene_synthase_metal-bd 304 568
IPR001906 Terpene_synth_N 74 267
No external refs found!