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  5. Solyc01g097010

Solyc01g097010


Description : Poly(RC)-binding protein, putative (AHRD V3.3 *** B9S7H6_RICCO)


Gene families : OG_42_0000691 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000691_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g097010
Cluster HCCA clusters: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
At3g04610 No alias Flowering locus K homology domain... 0.03 Orthogroups_2024-Update
Bradi1g14320 No alias RNA-binding KH domain-containing protein 0.02 Orthogroups_2024-Update
Glyma.02G140200 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.19G162000 No alias RNA-binding KH domain-containing protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP Predicted GO
BP GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004532 exoribonuclease activity IEP Predicted GO
MF GO:0004535 poly(A)-specific ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
MF GO:0005542 folic acid binding IEP Predicted GO
CC GO:0005672 transcription factor TFIIA complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
MF GO:0072341 modified amino acid binding IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 230 293
IPR004088 KH_dom_type_1 47 114
No external refs found!