MA_72828g0010

Description : (q9m3v8|rs6_aspof : 368.0) 40S ribosomal protein S6 - Asparagus officinalis (Garden asparagus) & (at4g31700 : 365.0) Encodes a putative ribosomal protein S6 (rps6a). RPS6A and RPS6B are fully redundant and essential during gametogenesis.; ribosomal protein S6 (RPS6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: growth, translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377); BEST Arabidopsis thaliana protein match is: Ribosomal protein S6e (TAIR:AT5G10360.1); Has 870 Blast hits to 868 proteins in 314 species: Archae - 19; Bacteria - 0; Metazoa - 402; Fungi - 166; Plants - 138; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). & (reliability: 730.0) & (original description: no original description)

Gene families : OG_42_0001972 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001972_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_72828g0010
Cluster	HCCA clusters: Cluster_166

Target	Alias	Description	ECC score	Gene Family Method
172795	No alias	Ribosomal protein S6e	0.1	Orthogroups_2024-Update
A4A49_38773	No alias	40s ribosomal protein s6-2	0.05	Orthogroups_2024-Update
A4A49_58422	No alias	40s ribosomal protein s6-1	0.07	Orthogroups_2024-Update
A4A49_61057	No alias	40s ribosomal protein s6-1	0.08	Orthogroups_2024-Update
At5g10360	No alias	40S ribosomal protein S6 [Source:UniProtKB/TrEMBL;Acc:A0A178USM6]	0.03	Orthogroups_2024-Update
Bradi1g21320	No alias	Ribosomal protein S6e	0.03	Orthogroups_2024-Update
Bradi1g60730	No alias	Ribosomal protein S6e	0.1	Orthogroups_2024-Update
Brara.A00605.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Brara.C00414.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Brara.H01340.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Brara.J02318.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Cre09.g400650	No alias	Ribosomal protein S6e	0.09	Orthogroups_2024-Update
GRMZM5G851698	No alias	Ribosomal protein S6e	0.07	Orthogroups_2024-Update
Glyma.07G198600	No alias	Ribosomal protein S6e	0.1	Orthogroups_2024-Update
Glyma.08G343800	No alias	Ribosomal protein S6e	0.06	Orthogroups_2024-Update
Glyma.13G177800	No alias	Ribosomal protein S6e	0.11	Orthogroups_2024-Update
Glyma.13G237800	No alias	Ribosomal protein S6e	0.09	Orthogroups_2024-Update
Glyma.15G075600	No alias	Ribosomal protein S6e	0.09	Orthogroups_2024-Update
HORVU2Hr1G010870.8	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
HORVU2Hr1G010890.2	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
HORVU2Hr1G029890.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Kfl00053_0450	kfl00053_0450_v1.1	(q9m3v8\|rs6_aspof : 374.0) 40S ribosomal protein S6 -...	0.09	Orthogroups_2024-Update
LOC_Os07g42950	No alias	40S ribosomal protein S6, putative, expressed	0.03	Orthogroups_2024-Update
Mp3g14840.1	No alias	component RPS6 of SSU proteome	0.02	Orthogroups_2024-Update
Mp4g01750.1	No alias	component RPS6 of SSU proteome	0.08	Orthogroups_2024-Update
Potri.005G072700	No alias	Ribosomal protein S6e	0.04	Orthogroups_2024-Update
Potri.005G162600	No alias	Ribosomal protein S6e	0.03	Orthogroups_2024-Update
Potri.007G096300	No alias	Ribosomal protein S6e	0.07	Orthogroups_2024-Update
Pp1s253_7V6	No alias	40S ribosomal protein S6 [Asparagus officinalis]	0.08	Orthogroups_2024-Update
Pp1s311_33V6	No alias	40S ribosomal protein S6 [Asparagus officinalis]	0.07	Orthogroups_2024-Update
Seita.2G394600.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Seita.3G362000.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Sobic.002G379500.3	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Sobic.008G098800.1	No alias	component *(eS6) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Solyc08g006040	No alias	40S ribosomal protein S6 (AHRD V3.3 *** K4CI93_SOLLC)	0.05	Orthogroups_2024-Update
Solyc08g074240	No alias	40S ribosomal protein S6 (AHRD V3.3 *** K4CME5_SOLLC)	0.11	Orthogroups_2024-Update
Solyc12g096300	No alias	40S ribosomal protein S6 (AHRD V3.3 *** K4DHA3_SOLLC)	0.1	Orthogroups_2024-Update
Sopen08g002010	No alias	Ribosomal protein S6e	0.13	Orthogroups_2024-Update
Sopen08g022890	No alias	Ribosomal protein S6e	0.13	Orthogroups_2024-Update
Sopen12g032160	No alias	Ribosomal protein S6e	0.08	Orthogroups_2024-Update
evm.model.contig_441.13	No alias	(q9m3v8\|rs6_aspof : 246.0) 40S ribosomal protein S6 -...	0.17	Orthogroups_2024-Update
evm.model.tig00000704.73	No alias	(at5g10360 : 214.0) RPS6A and RPS6B are fully redundant...	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003954	NADH dehydrogenase activity	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
BP	GO:0007034	vacuolar transport	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Predicted GO
BP	GO:0010629	negative regulation of gene expression	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Predicted GO
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Predicted GO
CC	GO:0016272	prefoldin complex	IEP	Predicted GO
BP	GO:0016458	gene silencing	IEP	Predicted GO
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Predicted GO
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0031047	gene silencing by RNA	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Predicted GO
CC	GO:0033180	proton-transporting V-type ATPase, V1 domain	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Predicted GO
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Predicted GO
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001377	Ribosomal_S6e	1	128

External Links

No external refs found!

MA_72828g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation