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  5. MA_7320190g0010

MA_7320190g0010


Description : (p19177|h2a_petcr : 149.0) Histone H2A - Petroselinum crispum (Parsley) (Petroselinum hortense) & (at5g02560 : 145.0) Encodes HTA12, a histone H2A protein.; histone H2A 12 (HTA12); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 6 (TAIR:AT5G59870.1). & (reliability: 290.0) & (original description: no original description)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_7320190g0010
Cluster HCCA clusters: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Bradi1g25390 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Bradi4g06010 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g264950 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre06.g265350 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre06.g268300 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g274200 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre06.g275850 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre12.g506250 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre13.g570100 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g709200 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre17.g711700 No alias histone H2A 10 0.01 Orthogroups_2024-Update
GRMZM2G041381 No alias histone H2A 2 0.04 Orthogroups_2024-Update
GRMZM2G151726 No alias histone H2A 2 0.03 Orthogroups_2024-Update
Glyma.13G333900 No alias histone H2A 12 0.03 Orthogroups_2024-Update
Glyma.13G334300 No alias histone H2A 12 0.03 Orthogroups_2024-Update
HORVU4Hr1G070250.3 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU5Hr1G026650.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU5Hr1G105090.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G006140.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU6Hr1G011490.2 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU6Hr1G021260.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G100120.13 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
LOC_Os03g17100 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os03g51200 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.03 Orthogroups_2024-Update
Mp2g00760.1 No alias histone (H2A) 0.02 Orthogroups_2024-Update
PSME_00008207-RA No alias (p02276|h2a2_wheat : 135.0) Histone H2A.2.1 - Triticum... 0.03 Orthogroups_2024-Update
PSME_00008212-RA No alias (p50567|h2a_chlre : 107.0) Histone H2A - Chlamydomonas... 0.03 Orthogroups_2024-Update
PSME_00015855-RA No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.03 Orthogroups_2024-Update
PSME_00017670-RA No alias (p35063|h2ax_picab : 188.0) Histone H2AX - Picea abies... 0.02 Orthogroups_2024-Update
PSME_00050693-RA No alias (at4g27230 : 166.0) Encodes HTA2, a histone H2A... 0.02 Orthogroups_2024-Update
Potri.005G026500 No alias histone H2A 7 0.03 Orthogroups_2024-Update
Seita.3G347600.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sobic.001G416800.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Solyc01g099410 No alias Histone H2A (AHRD V3.3 *** G8IIJ5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc09g074300 No alias Histone H2A (AHRD V3.3 *** K4CV07_SOLLC) 0.03 Orthogroups_2024-Update
Solyc09g082710 No alias Histone H2A (AHRD V3.3 *** K4CVP7_SOLLC) 0.03 Orthogroups_2024-Update
Solyc10g006560 No alias Histone H2A (AHRD V3.3 *** A0A0V0H7M3_SOLCH) 0.03 Orthogroups_2024-Update
Solyc12g005270 No alias Histone H2A (AHRD V3.3 *** K4DB65_SOLLC) 0.03 Orthogroups_2024-Update
Sopen09g029130 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen11g030880 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g030890 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
evm.model.contig_533.4 No alias (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004560 alpha-L-fucosidase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0015928 fucosidase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 100 133
IPR007125 Histone_H2A/H2B/H3 20 97
No external refs found!