Description : (at5g03240 : 222.0) encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.; polyubiquitin 3 (UBQ3); INVOLVED IN: protein modification process, response to UV-B, response to light stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 26684 Blast hits to 7218 proteins in 726 species: Archae - 0; Bacteria - 80; Metazoa - 12490; Fungi - 3021; Plants - 5505; Viruses - 651; Other Eukaryotes - 4937 (source: NCBI BLink). & (p69326|ubiq_wheat : 119.0) Ubiquitin - Triticum aestivum (Wheat) & (reliability: 444.0) & (original description: no original description)
Gene families : OG_42_0014215 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0014215_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_749198g0010 | |
Cluster | HCCA clusters: Cluster_247 |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Predicted GO |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Predicted GO |
BP | GO:0001101 | response to acid chemical | IEP | Predicted GO |
MF | GO:0004386 | helicase activity | IEP | Predicted GO |
CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
BP | GO:0006401 | RNA catabolic process | IEP | Predicted GO |
BP | GO:0006402 | mRNA catabolic process | IEP | Predicted GO |
BP | GO:0009892 | negative regulation of metabolic process | IEP | Predicted GO |
BP | GO:0010035 | response to inorganic substance | IEP | Predicted GO |
BP | GO:0010167 | response to nitrate | IEP | Predicted GO |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0010629 | negative regulation of gene expression | IEP | Predicted GO |
BP | GO:0015698 | inorganic anion transport | IEP | Predicted GO |
BP | GO:0015706 | nitrate transport | IEP | Predicted GO |
BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
BP | GO:0019439 | aromatic compound catabolic process | IEP | Predicted GO |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Predicted GO |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Predicted GO |
BP | GO:0046700 | heterocycle catabolic process | IEP | Predicted GO |
BP | GO:0048519 | negative regulation of biological process | IEP | Predicted GO |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Predicted GO |
BP | GO:1901698 | response to nitrogen compound | IEP | Predicted GO |
BP | GO:1901700 | response to oxygen-containing compound | IEP | Predicted GO |
No external refs found! |