Description : (at4g02750 : 590.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 118.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1114.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_74986g0020 | |
Cluster | HCCA clusters: Cluster_167 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
101 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
106129 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
93575 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
At3g03580 | No alias | Pentatricopeptide repeat-containing protein At3g03580... | 0.03 | Orthogroups_2024-Update | |
Bradi2g55230 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.12G183600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
PSME_00016247-RA | No alias | (at3g12770 : 627.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
PSME_00016248-RA | No alias | (at3g12770 : 631.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
PSME_00026765-RA | No alias | (at4g18750 : 678.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00031504-RA | No alias | (at3g23330 : 207.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00051353-RA | No alias | (at4g13650 : 695.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00054339-RA | No alias | (at4g14850 : 536.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00056168-RA | No alias | (at3g61170 : 686.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
PSME_00056606-RA | No alias | (at3g03580 : 586.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00056663-RA | No alias | (at3g13770 : 545.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
Potri.001G258500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.017G137200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Predicted GO |
MF | GO:0015095 | magnesium ion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015693 | magnesium ion transport | IEP | Predicted GO |
BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
MF | GO:0070566 | adenylyltransferase activity | IEP | Predicted GO |
BP | GO:0070838 | divalent metal ion transport | IEP | Predicted GO |
BP | GO:0072511 | divalent inorganic cation transport | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 284 | 331 |
IPR002885 | Pentatricopeptide_repeat | 384 | 433 |
IPR002885 | Pentatricopeptide_repeat | 120 | 167 |
IPR002885 | Pentatricopeptide_repeat | 196 | 222 |
IPR002885 | Pentatricopeptide_repeat | 459 | 483 |
IPR002885 | Pentatricopeptide_repeat | 224 | 254 |
IPR032867 | DYW_dom | 558 | 682 |
No external refs found! |