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  5. Solyc10g083410

Solyc10g083410


Description : LOW QUALITY:Peptidoglycan-binding LysM domain protein (AHRD V3.3 *** A0A072VJR4_MEDTR)


Gene families : OG_42_0001335 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001335_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g083410
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
A4A49_38566 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Brara.A01540.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I00678.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Glyma.19G193600 No alias peptidoglycan-binding LysM domain-containing protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G048910.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU1Hr1G048920.1 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_109238g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.012G135100 No alias peptidoglycan-binding LysM domain-containing protein 0.02 Orthogroups_2024-Update
Solyc03g026370 No alias LOW QUALITY:Peptidoglycan-binding LysM domain-containing... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
CC GO:0005811 lipid droplet IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
CC GO:0012511 monolayer-surrounded lipid storage body IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
InterPro domains Description Start Stop
IPR018392 LysM_dom 58 99
No external refs found!