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Description : (at1g30460 : 437.0) Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion.; cleavage and polyadenylation specificity factor 30 (CPSF30); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G21580.1); Has 1436 Blast hits to 1371 proteins in 231 species: Archae - 0; Bacteria - 2; Metazoa - 545; Fungi - 336; Plants - 156; Viruses - 9; Other Eukaryotes - 388 (source: NCBI BLink). & (reliability: 874.0) & (original description: no original description)
Gene families : OG_42_0119745 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_768g0010 | |
| Cluster | HCCA clusters: Cluster_214 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Predicted GO |
| MF | GO:0004129 | cytochrome-c oxidase activity | IEP | Predicted GO |
| MF | GO:0004175 | endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004618 | phosphoglycerate kinase activity | IEP | Predicted GO |
| MF | GO:0004650 | polygalacturonase activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005740 | mitochondrial envelope | IEP | Predicted GO |
| CC | GO:0005839 | proteasome core complex | IEP | Predicted GO |
| BP | GO:0006090 | pyruvate metabolic process | IEP | Predicted GO |
| BP | GO:0006096 | glycolytic process | IEP | Predicted GO |
| BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | Predicted GO |
| BP | GO:0006508 | proteolysis | IEP | Predicted GO |
| BP | GO:0006757 | ATP generation from ADP | IEP | Predicted GO |
| BP | GO:0006897 | endocytosis | IEP | Predicted GO |
| BP | GO:0006904 | vesicle docking involved in exocytosis | IEP | Predicted GO |
| MF | GO:0008233 | peptidase activity | IEP | Predicted GO |
| BP | GO:0009056 | catabolic process | IEP | Predicted GO |
| BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009166 | nucleotide catabolic process | IEP | Predicted GO |
| BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | Predicted GO |
| MF | GO:0015002 | heme-copper terminal oxidase activity | IEP | Predicted GO |
| MF | GO:0016675 | oxidoreductase activity, acting on a heme group of donors | IEP | Predicted GO |
| MF | GO:0016676 | oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor | IEP | Predicted GO |
| MF | GO:0016774 | phosphotransferase activity, carboxyl group as acceptor | IEP | Predicted GO |
| MF | GO:0016787 | hydrolase activity | IEP | Predicted GO |
| BP | GO:0019359 | nicotinamide nucleotide biosynthetic process | IEP | Predicted GO |
| BP | GO:0019363 | pyridine nucleotide biosynthetic process | IEP | Predicted GO |
| CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Predicted GO |
| BP | GO:0022406 | membrane docking | IEP | Predicted GO |
| CC | GO:0031967 | organelle envelope | IEP | Predicted GO |
| CC | GO:0031975 | envelope | IEP | Predicted GO |
| BP | GO:0042866 | pyruvate biosynthetic process | IEP | Predicted GO |
| BP | GO:0044248 | cellular catabolic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0046031 | ADP metabolic process | IEP | Predicted GO |
| BP | GO:0046939 | nucleotide phosphorylation | IEP | Predicted GO |
| BP | GO:0048278 | vesicle docking | IEP | Predicted GO |
| MF | GO:0051499 | D-aminoacyl-tRNA deacylase activity | IEP | Predicted GO |
| BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Predicted GO |
| BP | GO:0051640 | organelle localization | IEP | Predicted GO |
| MF | GO:0070003 | threonine-type peptidase activity | IEP | Predicted GO |
| MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Predicted GO |
| BP | GO:0098657 | import into cell | IEP | Predicted GO |
| BP | GO:0140029 | exocytic process | IEP | Predicted GO |
| BP | GO:0140056 | organelle localization by membrane tethering | IEP | Predicted GO |
| BP | GO:1901575 | organic substance catabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007275 | YTH_domain | 135 | 269 |
| No external refs found! |