MA_77198g0010

Description : (at3g45980 : 157.0) Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases as well as the UBC1 and UBC2 E2 ubiquitin conjugating enzymes. Lysine 146 appears to be the site of the ubiquitin addition.; HTB9; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G07790.1); Has 3616 Blast hits to 3469 proteins in 351 species: Archae - 0; Bacteria - 64; Metazoa - 2275; Fungi - 213; Plants - 487; Viruses - 0; Other Eukaryotes - 577 (source: NCBI BLink). & (p30755|h2b1_maize : 157.0) Histone H2B.1 - Zea mays (Maize) & (reliability: 314.0) & (original description: no original description)

Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_77198g0010
Cluster	HCCA clusters: Cluster_113

Label Co-occ.

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g47980	No alias	Histone superfamily protein	0.04	Orthogroups_2024-Update
Cre06.g264800	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre06.g265400	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g266750	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g268250	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g274250	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre06.g274750	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre06.g276550	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g276900	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g504700	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g506200	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre13.g570050	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre17.g708600	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre17.g711750	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G306258	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
HORVU1Hr1G066130.1	No alias	histone *(H2B)	0.04	Orthogroups_2024-Update
HORVU1Hr1G085540.1	No alias	histone *(H2B)	0.04	Orthogroups_2024-Update
MA_454575g0010	No alias	(p27807\|h2b1_wheat : 194.0) Histone H2B.1 - Triticum...	0.04	Orthogroups_2024-Update
Pp1s117_2V6	No alias	histone h2b	0.02	Orthogroups_2024-Update
Sobic.004G265400.1	No alias	histone *(H2B)	0.06	Orthogroups_2024-Update
Sobic.007G149600.1	No alias	histone *(H2B)	0.03	Orthogroups_2024-Update
Sopen03g019890	No alias	Core histone H2A/H2B/H3/H4	0.03	Orthogroups_2024-Update
Sopen12g006850	No alias	Core histone H2A/H2B/H3/H4	0.04	Orthogroups_2024-Update
evm.model.contig_498.4	No alias	(p16868\|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	Predicted GO
MF	GO:0005215	transporter activity	IEP	Predicted GO
BP	GO:0006413	translational initiation	IEP	Predicted GO
BP	GO:0006810	transport	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0015078	proton transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Predicted GO
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Predicted GO
MF	GO:0022857	transmembrane transporter activity	IEP	Predicted GO
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Predicted GO
CC	GO:0033179	proton-transporting V-type ATPase, V0 domain	IEP	Predicted GO
CC	GO:0044425	membrane part	IEP	Predicted GO
BP	GO:0051179	localization	IEP	Predicted GO
BP	GO:0051234	establishment of localization	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Predicted GO
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Predicted GO
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Predicted GO
BP	GO:1902600	proton transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	19	138

External Links

No external refs found!

MA_77198g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation