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Description : (at2g27610 : 621.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 54594 Blast hits to 14874 proteins in 305 species: Archae - 2; Bacteria - 30; Metazoa - 158; Fungi - 263; Plants - 53396; Viruses - 0; Other Eukaryotes - 745 (source: NCBI BLink). & (q76c99|rf1_orysa : 137.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1242.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_778985g0010 | |
| Cluster | HCCA clusters: Cluster_7 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 180944 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| 52147 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.04 | Orthogroups_2024-Update | |
| AC209718.1_FG009 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| At1g33350 | No alias | Pentatricopeptide repeat-containing protein At1g33350... | 0.04 | Orthogroups_2024-Update | |
| Bradi1g20737 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Bradi1g49477 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi1g68870 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi2g50550 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi4g19150 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.08G141600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.10G277600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.14G194400 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.17G165800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.20G112100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| PSME_00003207-RA | No alias | (at3g03580 : 671.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| PSME_00005384-RA | No alias | (at3g12770 : 639.0) Encodes a pentatricopeptide repeat... | 0.05 | Orthogroups_2024-Update | |
| PSME_00007759-RA | No alias | (at3g12770 : 656.0) Encodes a pentatricopeptide repeat... | 0.04 | Orthogroups_2024-Update | |
| PSME_00016653-RA | No alias | (at3g02010 : 685.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
| PSME_00028920-RA | No alias | (at4g33170 : 598.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| PSME_00049918-RA | No alias | (at4g18750 : 525.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| Potri.001G135400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Seita.5G385400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.9G489500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.001G009400.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Sobic.001G347100.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.002G111700.6 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.009G241200.3 | No alias | RNA editing factor *(ECB2/VAC1) | 0.02 | Orthogroups_2024-Update | |
| Sopen01g032600 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen03g016890 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032867 | DYW_dom | 686 | 780 |
| IPR002885 | Pentatricopeptide_repeat | 414 | 460 |
| IPR002885 | Pentatricopeptide_repeat | 514 | 560 |
| IPR002885 | Pentatricopeptide_repeat | 10 | 55 |
| IPR002885 | Pentatricopeptide_repeat | 211 | 258 |
| IPR002885 | Pentatricopeptide_repeat | 312 | 359 |
| IPR002885 | Pentatricopeptide_repeat | 110 | 157 |
| IPR002885 | Pentatricopeptide_repeat | 387 | 410 |
| IPR002885 | Pentatricopeptide_repeat | 654 | 683 |
| IPR002885 | Pentatricopeptide_repeat | 488 | 513 |
| IPR002885 | Pentatricopeptide_repeat | 186 | 210 |
| IPR002885 | Pentatricopeptide_repeat | 84 | 107 |
| No external refs found! |