1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_78481g0010

MA_78481g0010


Description : (at1g63130 : 360.0) Transacting siRNA generating locus. Its derived siR9as targets AT1G62930 for cleavage. Itself is targeted by TAS2-derived ta-siR2140 for cleavage.; Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62910.1); Has 68218 Blast hits to 15140 proteins in 318 species: Archae - 7; Bacteria - 75; Metazoa - 1255; Fungi - 1382; Plants - 62771; Viruses - 0; Other Eukaryotes - 2728 (source: NCBI BLink). & (q76c99|rf1_orysa : 345.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 656.0) & (original description: no original description)


Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_78481g0010
Cluster HCCA clusters: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
441332 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
MA_4589g0010 No alias (at3g22470 : 368.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_68479g0010 No alias (at1g62910 : 405.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
MA_854602g0010 No alias (at1g63080 : 271.0) Transacting siRNA generating locus.... 0.04 Orthogroups_2024-Update
MA_959553g0010 No alias (at3g22470 : 392.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00012029-RA No alias (at5g41170 : 136.0) Pentatricopeptide repeat (PPR-like)... 0.07 Orthogroups_2024-Update
PSME_00012031-RA No alias (at3g22470 : 323.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00014479-RA No alias (at1g12775 : 307.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00029699-RA No alias (at3g22470 : 363.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00040761-RA No alias (at5g39710 : 341.0) EMBRYO DEFECTIVE 2745 (EMB2745);... 0.06 Orthogroups_2024-Update
PSME_00041909-RA No alias (at1g12300 : 333.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00055307-RA No alias (at1g62910 : 279.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030686 90S preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 271 300
IPR002885 Pentatricopeptide_repeat 338 387
IPR002885 Pentatricopeptide_repeat 443 492
IPR002885 Pentatricopeptide_repeat 677 725
IPR002885 Pentatricopeptide_repeat 746 795
IPR002885 Pentatricopeptide_repeat 301 332
IPR002885 Pentatricopeptide_repeat 404 436
IPR002885 Pentatricopeptide_repeat 509 542
IPR002885 Pentatricopeptide_repeat 637 669
IPR002885 Pentatricopeptide_repeat 580 612
IPR002885 Pentatricopeptide_repeat 544 576
No external refs found!