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Description : (at3g19950 : 171.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 11106 Blast hits to 11075 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2940; Fungi - 1152; Plants - 5266; Viruses - 73; Other Eukaryotes - 1669 (source: NCBI BLink). & (reliability: 342.0) & (original description: no original description)
Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_79051g0010 | |
| Cluster | HCCA clusters: Cluster_176 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_07629 | No alias | e3 ubiquitin-protein ligase ring1-like protein | 0.02 | Orthogroups_2024-Update | |
| At3g13228 | No alias | RING/U-box superfamily protein... | 0.04 | Orthogroups_2024-Update | |
| At3g60080 | No alias | At3g60080 [Source:UniProtKB/TrEMBL;Acc:Q9M1D5] | 0.03 | Orthogroups_2024-Update | |
| Bradi3g37800 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Brara.G02768.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.I03147.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.I05006.1 | No alias | E3 ubiquitin ligase *(SNIPER) | 0.03 | Orthogroups_2024-Update | |
| Cre10.g422050 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G164358 | No alias | RING-H2 finger C1A | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G336761 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.15G047300 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.20G102400 | No alias | COP1-interacting protein 8 | 0.05 | Orthogroups_2024-Update | |
| HORVU6Hr1G080320.4 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| LOC_Os02g09820 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os11g37230 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os12g04450 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os12g04650 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_281830g0010 | No alias | (at5g08139 : 89.0) RING/U-box superfamily protein;... | 0.03 | Orthogroups_2024-Update | |
| MA_474338g0010 | No alias | (at2g39720 : 83.2) Encodes a putative RING-H2 finger... | 0.05 | Orthogroups_2024-Update | |
| Potri.005G062400 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Seita.8G172700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.005G165900.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Solyc10g045180 | No alias | E3 ubiquitin-protein ligase (AHRD V3.3 --* A0A0F7G5V7_9ROSI) | 0.02 | Orthogroups_2024-Update | |
| Solyc12g008480 | No alias | RING/U-box superfamily protein (AHRD V3.3 *-* AT1G60360.1) | 0.03 | Orthogroups_2024-Update | |
| Sopen03g029300 | No alias | Ring finger domain | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predicted GO |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Predicted GO |
| BP | GO:0006633 | fatty acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Predicted GO |
| BP | GO:0010468 | regulation of gene expression | IEP | Predicted GO |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0019222 | regulation of metabolic process | IEP | Predicted GO |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Predicted GO |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0050789 | regulation of biological process | IEP | Predicted GO |
| BP | GO:0050794 | regulation of cellular process | IEP | Predicted GO |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predicted GO |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0065007 | biological regulation | IEP | Predicted GO |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Predicted GO |
| MF | GO:0140110 | transcription regulator activity | IEP | Predicted GO |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predicted GO |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 77 | 119 |
| No external refs found! |