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  5. MA_79290g0010

MA_79290g0010


Description : (at3g61790 : 493.0) Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Zinc finger, RING-type (InterPro:IPR001841), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT4G27880.1); Has 1836 Blast hits to 1817 proteins in 706 species: Archae - 0; Bacteria - 0; Metazoa - 1264; Fungi - 11; Plants - 486; Viruses - 2; Other Eukaryotes - 73 (source: NCBI BLink). & (q8t3y0|sinal_drome : 156.0) Probable E3 ubiquitin-protein ligase sina-like CG13030 (EC 6.3.2.-) - Drosophila melanogaster (Fruit fly) & (reliability: 986.0) & (original description: no original description)


Gene families : OG_42_0000730 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000730_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_79290g0010
Cluster HCCA clusters: Cluster_195

Target Alias Description ECC score Gene Family Method Actions
Brara.H01506.1 No alias E3 ubiquitin ligase *(SINA) 0.02 Orthogroups_2024-Update
Potri.002G171500 No alias Protein with RING/U-box and TRAF-like domains 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA InterProScan predictions
BP GO:0007275 multicellular organism development IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 99 298
No external refs found!