MA_7977g0010

Description : (at4g18750 : 283.0) Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.; DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). & (reliability: 526.0) & (original description: no original description)

Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_7977g0010
Cluster	HCCA clusters: Cluster_83

Target	Alias	Description	ECC score	Gene Family Method
105729	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Orthogroups_2024-Update
At3g49170	No alias	Pentatricopeptide repeat-containing protein At3g49170,...	0.03	Orthogroups_2024-Update
Bradi3g36470	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Orthogroups_2024-Update
GRMZM2G163396	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
HORVU5Hr1G047290.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
PSME_00001942-RA	No alias	(at3g57430 : 689.0) Encodes a chloroplast RNA editing...	0.03	Orthogroups_2024-Update
PSME_00004170-RA	No alias	(at2g27610 : 399.0) Tetratricopeptide repeat (TPR)-like...	0.04	Orthogroups_2024-Update
PSME_00007652-RA	No alias	(at1g11290 : 614.0) Pentatricopeptide Repeat Protein...	0.03	Orthogroups_2024-Update
PSME_00010951-RA	No alias	(at1g11290 : 537.0) Pentatricopeptide Repeat Protein...	0.05	Orthogroups_2024-Update
PSME_00022686-RA	No alias	(at1g11290 : 619.0) Pentatricopeptide Repeat Protein...	0.03	Orthogroups_2024-Update
PSME_00035769-RA	No alias	(at4g13650 : 702.0) Pentatricopeptide repeat (PPR)...	0.04	Orthogroups_2024-Update
PSME_00051353-RA	No alias	(at4g13650 : 695.0) Pentatricopeptide repeat (PPR)...	0.05	Orthogroups_2024-Update
PSME_00056843-RA	No alias	(at4g02750 : 457.0) Tetratricopeptide repeat (TPR)-like...	0.03	Orthogroups_2024-Update
Sobic.001G478900.2	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.002G172500.3	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.003G380100.2	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.004G312000.1	No alias	RNA editing factor *(CLB19)	0.02	Orthogroups_2024-Update
Sobic.008G009000.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.010G232700.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc01g081020	No alias	Pentatricopeptide repeat-containing protein (AHRD V3.3...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004640	phosphoribosylanthranilate isomerase activity	IEA	InterProScan predictions
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006568	tryptophan metabolic process	IEA	InterProScan predictions
BP	GO:0006576	cellular biogenic amine metabolic process	None	Extended
BP	GO:0006586	indolalkylamine metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009072	aromatic amino acid family metabolic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016860	intramolecular oxidoreductase activity	None	Extended
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042430	indole-containing compound metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044106	cellular amine metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	155	203
IPR002885	Pentatricopeptide_repeat	257	304
IPR002885	Pentatricopeptide_repeat	231	254
IPR001240	PRAI	18	127

External Links

No external refs found!

MA_7977g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation