Description : (q9frv0|chic_secce : 335.0) Basic endochitinase C precursor (EC 3.2.1.14) (Rye seed chitinase-c) (RSC-c) - Secale cereale (Rye) & (at3g12500 : 316.0) encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.; basic chitinase (HCHIB); FUNCTIONS IN: chitinase activity; INVOLVED IN: response to cadmium ion, defense response to fungus, jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT4G01700.1); Has 2944 Blast hits to 2653 proteins in 549 species: Archae - 0; Bacteria - 615; Metazoa - 38; Fungi - 228; Plants - 1922; Viruses - 10; Other Eukaryotes - 131 (source: NCBI BLink). & (reliability: 632.0) & (original description: no original description)
Gene families : OG_42_0000472 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000472_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_80085g0010 | |
Cluster | HCCA clusters: Cluster_204 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi2g26000 | No alias | basic chitinase | 0.02 | Orthogroups_2024-Update | |
Brara.C03413.1 | No alias | basic chitinase *(CHIB) | 0.03 | Orthogroups_2024-Update | |
GRMZM2G103668 | No alias | basic chitinase | 0.02 | Orthogroups_2024-Update | |
Glyma.02G007400 | No alias | Chitinase family protein | 0.03 | Orthogroups_2024-Update | |
HORVU1Hr1G017670.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Potri.004G182000 | No alias | basic chitinase | 0.04 | Orthogroups_2024-Update | |
Sobic.009G012100.1 | No alias | basic chitinase *(CHIB) | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004568 | chitinase activity | IEA | InterProScan predictions |
BP | GO:0006032 | chitin catabolic process | IEA | InterProScan predictions |
BP | GO:0016998 | cell wall macromolecule catabolic process | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001101 | response to acid chemical | IEP | Predicted GO |
MF | GO:0004523 | RNA-DNA hybrid ribonuclease activity | IEP | Predicted GO |
BP | GO:0009415 | response to water | IEP | Predicted GO |
BP | GO:0009628 | response to abiotic stimulus | IEP | Predicted GO |
BP | GO:0010035 | response to inorganic substance | IEP | Predicted GO |
BP | GO:0042221 | response to chemical | IEP | Predicted GO |
BP | GO:1901700 | response to oxygen-containing compound | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000726 | Glyco_hydro_19_cat | 36 | 254 |
No external refs found! |