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  5. MA_80720g0010

MA_80720g0010


Description : (at1g53330 : 307.0) encodes a member of the pentatricopeptide repeat (PPR) gene family. T-DNA insertion mutants had a complex phenotypic expression, ranging from embryo lethal to seedling lethal, to just subtle changes.; Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: rna processing factor 2 (TAIR:AT1G62670.1); Has 42827 Blast hits to 13568 proteins in 292 species: Archae - 4; Bacteria - 35; Metazoa - 401; Fungi - 615; Plants - 40434; Viruses - 0; Other Eukaryotes - 1338 (source: NCBI BLink). & (q76c99|rf1_orysa : 167.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 614.0) & (original description: no original description)


Gene families : OG_42_0008911 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008911_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_80720g0010
Cluster HCCA clusters: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Brara.H00135.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G127015 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Sobic.002G257600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc12g014330 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 393 414
IPR002885 Pentatricopeptide_repeat 142 173
IPR002885 Pentatricopeptide_repeat 277 309
IPR002885 Pentatricopeptide_repeat 175 204
IPR002885 Pentatricopeptide_repeat 210 259
IPR002885 Pentatricopeptide_repeat 315 363
IPR002885 Pentatricopeptide_repeat 84 108
No external refs found!