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- Picea abies
- Sequence
- MA_80970g0010
MA_80970g0010
Description : (at1g11290 : 615.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 124.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1230.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type Description Actions Neighborhood Picea release: MA_80970g0010 Cluster HCCA clusters: Cluster_7
Expression Context Conservation (ECC)
Target Alias Description ECC score Gene Family Method Actions 101239 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update 108969 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update 110342 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update 88697 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update At3g46790 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Orthogroups_2024-Update Bradi1g49477 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update Bradi2g50550 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update Bradi3g43210 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update LOC_Os07g07620 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update PSME_00001942-RA No alias (at3g57430 : 689.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update PSME_00004102-RA No alias (at4g02750 : 508.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update PSME_00005432-RA No alias (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update PSME_00008064-RA No alias (at3g49170 : 637.0) embryo defective 2261 (EMB2261);... 0.03 Orthogroups_2024-Update PSME_00011618-RA No alias (at3g57430 : 608.0) Encodes a chloroplast RNA editing... 0.05 Orthogroups_2024-Update PSME_00016247-RA No alias (at3g12770 : 627.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update PSME_00016248-RA No alias (at3g12770 : 631.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update PSME_00024152-RA No alias (at2g13600 : 434.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update PSME_00031955-RA No alias (at1g11290 : 710.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update PSME_00035769-RA No alias (at4g13650 : 702.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update PSME_00035796-RA No alias (at1g11290 : 732.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update PSME_00041541-RA No alias (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update PSME_00046650-RA No alias (at4g21300 : 573.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update PSME_00051765-RA No alias (at3g03580 : 693.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update PSME_00055621-RA No alias (at1g16480 : 701.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update PSME_00056121-RA No alias (at4g13650 : 672.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update PSME_00056843-RA No alias (at4g02750 : 457.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update PSME_00057187-RA No alias (at1g11290 : 659.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update Pp1s15_448V6 No alias MZB10.7; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update Pp1s26_175V6 No alias T28P6.20; pentatricopeptide (PPR) repeat-containing... 0.03 Orthogroups_2024-Update Sobic.001G149100.1 No alias Unknown function 0.03 Orthogroups_2024-Update Sobic.001G212200.1 No alias Unknown function 0.02 Orthogroups_2024-Update Sobic.003G047400.1 No alias RNA editing factor *(OTP81) 0.02 Orthogroups_2024-Update Sobic.003G142400.2 No alias RNA editing factor *(PGN) 0.04 Orthogroups_2024-Update Sobic.003G333200.1 No alias Unknown function 0.03 Orthogroups_2024-Update Sobic.004G051600.1 No alias Unknown function 0.02 Orthogroups_2024-Update Sobic.004G053100.1 No alias Unknown function 0.03 Orthogroups_2024-Update Sobic.004G217900.2 No alias Unknown function 0.02 Orthogroups_2024-Update Sobic.004G290400.1 No alias Unknown function 0.03 Orthogroups_2024-Update Sobic.004G312000.1 No alias RNA editing factor *(CLB19) 0.03 Orthogroups_2024-Update Sobic.006G069100.3 No alias Unknown function 0.03 Orthogroups_2024-Update Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.02 Orthogroups_2024-Update Sobic.008G009000.1 No alias Unknown function 0.03 Orthogroups_2024-Update Sobic.009G116400.4 No alias Unknown function 0.03 Orthogroups_2024-Update Sobic.009G155400.3 No alias Unknown function 0.02 Orthogroups_2024-Update Sobic.010G067000.1 No alias RNA editing factor *(MEF29) 0.03 Orthogroups_2024-Update
Functional Annotation
Type GO Term Name Evidence Source MF GO:0003674 molecular_function None Extended MF GO:0005488 binding None Extended MF GO:0008270 zinc ion binding IEA InterProScan predictions MF GO:0043167 ion binding None Extended MF GO:0043169 cation binding None Extended MF GO:0046872 metal ion binding None Extended MF GO:0046914 transition metal ion binding None Extended Type GO Term Name Evidence Source MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Predicted GO MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Predicted GO MF GO:0005347 ATP transmembrane transporter activity IEP Predicted GO MF GO:0005471 ATP:ADP antiporter activity IEP Predicted GO BP GO:0006862 nucleotide transport IEP Predicted GO MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO MF GO:0015215 nucleotide transmembrane transporter activity IEP Predicted GO MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Predicted GO MF GO:0015217 ADP transmembrane transporter activity IEP Predicted GO MF GO:0015301 anion:anion antiporter activity IEP Predicted GO MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Predicted GO BP GO:0015748 organophosphate ester transport IEP Predicted GO BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO CC GO:0019867 outer membrane IEP Predicted GO MF GO:0099516 ion antiporter activity IEP Predicted GO MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO InterPro domains Description Start Stop IPR002885 Pentatricopeptide_repeat 341 384 IPR002885 Pentatricopeptide_repeat 442 488 IPR002885 Pentatricopeptide_repeat 542 589 IPR002885 Pentatricopeptide_repeat 240 287 IPR032867 DYW_dom 716 840 IPR002885 Pentatricopeptide_repeat 150 178 IPR002885 Pentatricopeptide_repeat 618 641 External LinksNo external refs found! Loading ... please wait ...