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  5. Solyc10g084350

Solyc10g084350


Description : 60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR)


Gene families : OG_42_0001916 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001916_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g084350
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
166994 No alias Ribosomal protein L4/L1 family 0.12 Orthogroups_2024-Update
At5g02870 No alias 60S ribosomal protein L4-2... 0.03 Orthogroups_2024-Update
Bradi1g05510 No alias Ribosomal protein L4/L1 family 0.13 Orthogroups_2024-Update
Bradi1g55510 No alias Ribosomal protein L4/L1 family 0.15 Orthogroups_2024-Update
Brara.A03522.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Brara.C00088.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.E03076.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Brara.J02849.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Cre09.g397697 No alias Ribosomal protein L4/L1 family 0.02 Orthogroups_2024-Update
GRMZM2G007695 No alias Ribosomal protein L4/L1 family 0.09 Orthogroups_2024-Update
GRMZM2G100403 No alias Ribosomal protein L4/L1 family 0.09 Orthogroups_2024-Update
Glyma.03G177400 No alias Ribosomal protein L4/L1 family 0.06 Orthogroups_2024-Update
Glyma.10G048600 No alias Ribosomal protein L4/L1 family 0.13 Orthogroups_2024-Update
Glyma.13G136400 No alias Ribosomal protein L4/L1 family 0.1 Orthogroups_2024-Update
HORVU4Hr1G075710.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
HORVU5Hr1G105870.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Kfl00456_0100 kfl00456_0100_v1.1 (at3g09630 : 489.0) Ribosomal protein L4/L1 family;... 0.04 Orthogroups_2024-Update
Potri.016G084400 No alias Ribosomal protein L4/L1 family 0.04 Orthogroups_2024-Update
Potri.T159800 No alias Ribosomal protein L4/L1 family 0.04 Orthogroups_2024-Update
Pp1s10_102V6 No alias 60s ribosomal protein l4 0.03 Orthogroups_2024-Update
Pp1s40_305V6 No alias 60s ribosomal protein l4 0.06 Orthogroups_2024-Update
Seita.2G055300.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.16 Orthogroups_2024-Update
Seita.9G056000.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.001G057300.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Sobic.002G054000.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Solyc10g086010 No alias 60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR) 0.07 Orthogroups_2024-Update
Sopen09g002120 No alias Ribosomal protein L4/L1 family 0.13 Orthogroups_2024-Update
Sopen10g033800 No alias Ribosomal protein L4/L1 family 0.18 Orthogroups_2024-Update
Sopen10g035380 No alias Ribosomal protein L4/L1 family 0.09 Orthogroups_2024-Update
evm.model.contig_2049.5 No alias (at3g09630 : 394.0) Ribosomal protein L4/L1 family;... 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR025755 Ribos_L4_C_dom 285 357
IPR002136 Ribosomal_L4/L1e 30 271
No external refs found!