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  5. MA_8325275g0010

MA_8325275g0010


Description : (at1g12220 : 93.2) Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.; RESISTANT TO P. SYRINGAE 5 (RPS5); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G12280.1). & (reliability: 174.8) & (original description: no original description)


Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_8325275g0010
Cluster HCCA clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
At1g52660 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Brara.F00299.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F00866.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I01184.1 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU2Hr1G089020.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g72680 No alias disease resistance protein RPS2, putative, expressed 0.02 Orthogroups_2024-Update
MA_53162g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_53162g0020 No alias (at5g43740 : 114.0) Disease resistance protein... 0.06 Orthogroups_2024-Update
PSME_00004155-RA No alias (at1g12220 : 266.0) Resistance gene, mediates resistance... 0.03 Orthogroups_2024-Update
PSME_00004450-RA No alias (at4g10780 : 156.0) LRR and NB-ARC domains-containing... 0.03 Orthogroups_2024-Update
PSME_00011110-RA No alias (at5g43740 : 165.0) Disease resistance protein... 0.03 Orthogroups_2024-Update
PSME_00011883-RA No alias (at4g27220 : 218.0) NB-ARC domain-containing disease... 0.04 Orthogroups_2024-Update
PSME_00026738-RA No alias (at1g61180 : 216.0) LRR and NB-ARC domains-containing... 0.03 Orthogroups_2024-Update
PSME_00027915-RA No alias (at1g15890 : 191.0) Disease resistance protein... 0.03 Orthogroups_2024-Update
PSME_00030472-RA No alias (at1g15890 : 234.0) Disease resistance protein... 0.04 Orthogroups_2024-Update
PSME_00037099-RA No alias (at4g26090 : 230.0) Encodes a plasma membrane protein... 0.03 Orthogroups_2024-Update
PSME_00045900-RA No alias (at1g12220 : 213.0) Resistance gene, mediates resistance... 0.05 Orthogroups_2024-Update
PSME_00053148-RA No alias (at1g12210 : 218.0) RFL1 has high sequence similarity to... 0.03 Orthogroups_2024-Update
PSME_00056885-RA No alias (at4g27220 : 223.0) NB-ARC domain-containing disease... 0.03 Orthogroups_2024-Update
Potri.001G313301 No alias Disease resistance protein (CC-NBS-LRR class) family 0.03 Orthogroups_2024-Update
Potri.T003800 No alias NB-ARC domain-containing disease resistance protein 0.02 Orthogroups_2024-Update
Potri.T014700 No alias NB-ARC domain-containing disease resistance protein 0.05 Orthogroups_2024-Update
Potri.T026800 No alias LRR and NB-ARC domains-containing disease resistance protein 0.03 Orthogroups_2024-Update
Potri.T044500 No alias NB-ARC domain-containing disease resistance protein 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 119 178
No external refs found!