1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_83898g0010

MA_83898g0010


Description : (at1g11290 : 636.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 135.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1272.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_83898g0010
Cluster HCCA clusters: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
A4A49_23672 No alias pentatricopeptide repeat-containing protein, mitochondrial 0.05 Orthogroups_2024-Update
Bradi1g60637 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g03730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g23670 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g40131 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g33270 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.F01301.1 No alias RNA editing factor *(OTP970) 0.02 Orthogroups_2024-Update
Brara.G01460.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.J02108.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.01G048100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
MA_11454g0010 No alias (at4g13650 : 676.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_13057g0010 No alias (at4g33170 : 800.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_138190g0010 No alias (at1g11290 : 553.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_656915g0010 No alias (at4g18750 : 657.0) Encodes a pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
MA_9258g0010 No alias (at4g13650 : 664.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00004138-RA No alias (at1g11290 : 633.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00032959-RA No alias (at3g46790 : 529.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00036639-RA No alias (at1g11290 : 691.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00048581-RA No alias (at4g02750 : 590.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Potri.006G245300 No alias Function unknown 0.02 Orthogroups_2024-Update
Potri.013G058900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G091600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.018G067500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G203300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G161100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G380100.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc01g081290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc01g094850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.02 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.02 Orthogroups_2024-Update
Sopen10g003810 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 1 41
IPR002885 Pentatricopeptide_repeat 95 141
IPR002885 Pentatricopeptide_repeat 398 444
IPR002885 Pentatricopeptide_repeat 296 343
IPR002885 Pentatricopeptide_repeat 195 243
IPR032867 DYW_dom 567 690
IPR002885 Pentatricopeptide_repeat 473 496
No external refs found!