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  5. MA_8419970g0010

MA_8419970g0010


Description : (q8sag3|adf_vitvi : 239.0) Actin-depolymerizing factor (ADF) - Vitis vinifera (Grape) & (at2g31200 : 219.0) Encodes actin depolymerizing factor 6 (ADF6).; actin depolymerizing factor 6 (ADF6); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 1 (TAIR:AT3G46010.2); Has 1444 Blast hits to 1440 proteins in 268 species: Archae - 0; Bacteria - 3; Metazoa - 597; Fungi - 161; Plants - 515; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink). & (reliability: 438.0) & (original description: no original description)


Gene families : OG_42_0000295 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000295_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_8419970g0010
Cluster HCCA clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
At4g34970 No alias Actin-depolymerizing factor 9... 0.03 Orthogroups_2024-Update
Bradi5g17960 No alias actin depolymerizing factor 11 0.04 Orthogroups_2024-Update
LOC_Os03g60580 No alias actin-depolymerizing factor, putative, expressed 0.03 Orthogroups_2024-Update
Potri.004G173800 No alias actin depolymerizing factor 5 0.02 Orthogroups_2024-Update
Seita.9G034000.1 No alias actin-depolymerizing factor 0.02 Orthogroups_2024-Update
Seita.9G350400.1 No alias actin-depolymerizing factor 0.02 Orthogroups_2024-Update
Solyc09g072590 No alias Actin-depolymerizing factor (AHRD V3.3 *** ADF_VITVI) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0003006 developmental process involved in reproduction IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004451 isocitrate lyase activity IEP Predicted GO
MF GO:0004474 malate synthase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006097 glyoxylate cycle IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0009790 embryo development IEP Predicted GO
BP GO:0009793 embryo development ending in seed dormancy IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016833 oxo-acid-lyase activity IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
BP GO:0046487 glyoxylate metabolic process IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002108 ADF-H 18 140
No external refs found!