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  5. MA_854602g0010

MA_854602g0010


Description : (at1g63080 : 271.0) Transacting siRNA generating locus. Is targeted by TAS2-derived ta-siR2140 for cleavage.; Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G62930.1); Has 67700 Blast hits to 15348 proteins in 310 species: Archae - 4; Bacteria - 76; Metazoa - 1251; Fungi - 1270; Plants - 62359; Viruses - 0; Other Eukaryotes - 2740 (source: NCBI BLink). & (q76c99|rf1_orysa : 223.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 494.0) & (original description: no original description)


Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_854602g0010
Cluster HCCA clusters: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
441332 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
MA_4685g0010 No alias (at5g55840 : 385.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
MA_78481g0010 No alias (at1g63130 : 360.0) Transacting siRNA generating locus.... 0.04 Orthogroups_2024-Update
MA_89072g0010 No alias (at3g22470 : 320.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00012029-RA No alias (at5g41170 : 136.0) Pentatricopeptide repeat (PPR-like)... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 104 151
IPR002885 Pentatricopeptide_repeat 349 398
IPR002885 Pentatricopeptide_repeat 244 293
IPR002885 Pentatricopeptide_repeat 175 223
IPR002885 Pentatricopeptide_repeat 314 342
IPR002885 Pentatricopeptide_repeat 41 62
No external refs found!